RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 EHMT1Q9H9B1 1298 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZDHHC18Q9NUE0 388 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SEPT11Q9NVA2 429 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FAM107AO95990 144 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 VCAM1P19320 739 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RFX1P22670 979 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PRPF4BQ13523 1007 aaKnown RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 NBPF12Q5TAG4 269 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 AADACL2Q6P093 401 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ADAT2Q7Z6V5 191 aaKnown RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SPATS2Q86XZ4 545 aaKnown RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RIT2Q99578 217 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GLIS2Q9BZE0 524 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TRIM31Q9BZY9 425 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 UBE2TQ9NPD8 197 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TMOD2Q9NZR1 351 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ALG6Q9Y672 507 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DCDC2CA8MYV0 355 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 K7ENM7 598 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DDX39AO00148 427 aaKnown RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MEFVO15553 781 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PLA2G6O60733 806 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TCEAL1Q15170 157 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 EPC2Q52LR7 807 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MAEAQ7L5Y9 396 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CCDC91Q7Z6B0 441 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 LDHDQ86WU2 507 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZSWIM2Q8NEG5 633 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PLEKHO2Q8TD55 490 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TMEM174Q8WUU8 243 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ERP44Q9BS26 406 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 EPB41L4BQ9H329 900 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 VCPKMTQ9H867 229 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FBXO28Q9NVF7 368 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TMOD4Q9NZQ9 345 aa17.36■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 VAMP7P51809 220 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DR1Q01658 176 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GLG1Q92896 1179 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 L3MBTL3Q96JM7 780 aaPredicted RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RAB17Q9H0T7 212 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 NOVA2Q9UNW9 492 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 E7EVH7 732 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DHX15O43143 795 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FTLP02792 175 aaPredicted RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 BCRP11274 1271 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 KRT13P13646 458 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TMOD1P28289 359 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PPP2R2AP63151 447 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PPARDQ03181 441 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZYXQ15942 572 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SWT1Q5T5J6 900 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 INTS8Q75QN2 995 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RHOT2Q8IXI1 618 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 NEK9Q8TD19 979 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 KRT35Q92764 455 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 NAP1L3Q99457 506 aaPredicted RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CBWD1Q9BRT8 395 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZNF408Q9H9D4 720 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PPANQ9NQ55 473 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 COL20A1Q9P218 1284 aa17.35■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FAM187AA6NFU0 413 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MAPTP10636 758 aaKnown RBP17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PTGIRP43119 386 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FNTAP49354 379 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 HSD17B4P51659 736 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GSCP56915 257 aaPredicted RBP17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PPP2R5EQ16537 467 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SPDYCQ5MJ68 293 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 C11orf63Q6NUN7 778 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MOB2Q70IA6 237 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 YTHDF3Q7Z739 585 aaKnown RBP17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 EGFL6Q8IUX8 553 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 C12orf56Q8IXR9 622 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZDHHC14Q8IZN3 488 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MTMR14Q8NCE2 650 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 KAT5Q92993 513 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PCDHB18PQ96TA0 734 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FMO2Q99518 471 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RPTORQ8N122 1335 aa17.34■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CHRNB2P17787 502 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GCLMP48507 274 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MARCKSL1P49006 195 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 C6orf89Q6UWU4 347 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZDHHC24Q6UX98 284 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MIER3Q7Z3K6 550 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 JAMLQ86YT9 394 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RPUSD2Q8IZ73 545 aaKnown RBP17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 IL31RAQ8NI17 732 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FAM151AQ8WW52 585 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TMEM206Q9H813 350 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PKD2L1Q9P0L9 805 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GGA2Q9UJY4 613 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ATP8A1Q9Y2Q0 1164 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZHX2Q9Y6X8 837 aa17.33■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GMNCA6NCL1 334 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 KIAA0391O15091 583 aaKnown RBP17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 P4HA2O15460 535 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TRAPPC3O43617 180 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 P4HBP07237 508 aaKnown RBP17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MAGOHP61326 146 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms