RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SPA17Q15506 151 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 CCL14Q16627 93 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 FAM187BQ17R55 369 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 SLC9C1Q4G0N8 1177 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 DNTTIP2Q5QJE6 756 aaKnown RBP9.19□□□□□ -0.94
SF3A1-210ENST00000498259 GJC2Q5T442 439 aaPredicted RBP9.19□□□□□ -0.94
SF3A1-210ENST00000498259 KRT39Q6A163 491 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 TSHZ1Q6ZSZ6 1077 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 FAM43BQ6ZT52 329 aaPredicted RBP9.19□□□□□ -0.94
SF3A1-210ENST00000498259 KSR1Q8IVT5 923 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 RDH13Q8NBN7 331 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 ASAP3Q8TDY4 903 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 NLRP7Q8WX94 980 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 BSNDQ8WZ55 320 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 SLC35C1Q96A29 364 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 BORCS6Q96GS4 357 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 CCDC42Q96M95 316 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 MFSD14AQ96MC6 490 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 DNAJC7Q99615 494 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 DEF6Q9H4E7 631 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 PCIF1Q9H4Z3 704 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 FAM207AQ9NSI2 230 aaPredicted RBP9.19□□□□□ -0.94
SF3A1-210ENST00000498259 GCNT4Q9P109 453 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 TELO2Q9Y4R8 837 aa9.19□□□□□ -0.94
SF3A1-210ENST00000498259 A0A0B4J269 797 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 TTC26A0AVF1 554 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 ZC3H11AO75152 810 aaKnown RBP eCLIP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 ECM2O94769 699 aaPredicted RBP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 SMIM10L2AP0DMW4 78 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 SMIM10L2BP0DMW5 78 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 AXLP30530 894 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 HNRNPH3P31942 346 aaKnown RBP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 CLCN1P35523 988 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 MYH11P35749 1972 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 CASP4P49662 377 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 SOX10P56693 466 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 CCZ1BP86790 482 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 CCZ1P86791 482 aaPredicted RBP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 ARID5BQ14865 1188 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 SFMBT2Q5VUG0 894 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 ENOSF1Q7L5Y1 443 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 LRRC71Q8N4P6 559 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 TRIB2Q92519 343 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 ZIC5Q96T25 663 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 CBWD1Q9BRT8 395 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 FAM213AQ9BRX8 229 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 KIFC3Q9BVG8 833 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 LSM14BQ9BX40 385 aaKnown RBP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 IMPG2Q9BZV3 1241 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 UPF3AQ9H1J1 476 aaKnown RBP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 KCNF1Q9H3M0 494 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 FZD8Q9H461 694 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 TMEM8AQ9HCN3 771 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 XPNPEP3Q9NQH7 507 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 PLAGL2Q9UPG8 496 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 TNFSF13BQ9Y275 285 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 SIK3Q9Y2K2 1263 aa9.18□□□□□ -0.94
SF3A1-210ENST00000498259 R3HCC1Q9Y3T6 440 aaKnown RBP9.18□□□□□ -0.94
SF3A1-210ENST00000498259 MBLAC1A4D2B0 266 aaPredicted RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 HAS3O00219 553 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 OGTO15294 1046 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 IL18RAPO95256 599 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 MCF2P10911 925 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CYP2C9P11712 490 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PRKAR2AP13861 404 aaKnown RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 TNNI1P19237 187 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 FECHP22830 423 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CST5P28325 142 aaPredicted RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 ADSSP30520 456 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 MXI1P50539 228 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 FXR1P51114 621 aaKnown RBP eCLIP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CLCN3P51790 818 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CHMP4BP1P59074 171 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PURAQ00577 322 aaKnown RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PTPN11Q06124 597 aaPredicted RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 MCL1Q07820 350 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CYP24A1Q07973 514 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CACNB2Q08289 660 aaPredicted RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 LRMPQ12912 555 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PSMD6Q15008 389 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PTPN14Q15678 1187 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 MEA1Q16626 185 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 WDR44Q5JSH3 913 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 C10orf76Q5T2E6 689 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 ATF7IP2Q5U623 682 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 KLHDC7AQ5VTJ3 777 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 MPZL3Q6UWV2 235 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 RRAGAQ7L523 313 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CD302Q8IX05 232 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 ARRDC4Q8NCT1 418 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 PARD3BQ8TEW8 1205 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 LMBR1Q8WVP7 490 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 TSPAN18Q96SJ8 248 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 ACO2Q99798 780 aaKnown RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 TSEN34Q9BSV6 310 aaKnown RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 TARS2Q9BW92 718 aaKnown RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 CCDC113Q9H0I3 377 aa9.17□□□□□ -0.94
SF3A1-210ENST00000498259 HMX1Q9NP08 348 aaPredicted RBP9.17□□□□□ -0.94
SF3A1-210ENST00000498259 SPTLC3Q9NUV7 552 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms