RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PLEKHA4Q9H4M7 779 aa18.52■□□□□ 0.56
VIM-208ENST00000497849 AGPAT5Q9NUQ2 364 aa18.52■□□□□ 0.56
VIM-208ENST00000497849 ZDHHC7Q9NXF8 308 aa18.52■□□□□ 0.56
VIM-208ENST00000497849 SUCLA2Q9P2R7 463 aaPredicted RBP18.52■□□□□ 0.56
VIM-208ENST00000497849 SMG5Q9UPR3 1016 aaKnown RBP18.52■□□□□ 0.56
VIM-208ENST00000497849 F8W810 466 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 MSH4O15457 936 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 TGM5O43548 720 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 CHMP2AO43633 222 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 GAS2O43903 313 aaKnown RBP18.51■□□□□ 0.55
VIM-208ENST00000497849 DSG1Q02413 1049 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 UBXN11Q5T124 520 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 SYNE3Q6ZMZ3 975 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 COLGALT2Q8IYK4 626 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 IFT122Q9HBG6 1241 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 CHST7Q9NS84 486 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 FAM217BQ9NTX9 383 aaPredicted RBP18.51■□□□□ 0.55
VIM-208ENST00000497849 SEPT9Q9UHD8 586 aaPredicted RBP18.51■□□□□ 0.55
VIM-208ENST00000497849 BRPF3Q9ULD4 1205 aa18.51■□□□□ 0.55
VIM-208ENST00000497849 CNTNAP2Q9UHC6 1331 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 C1RP00736 705 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 DNM2P50570 870 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 MLF2Q15773 248 aaPredicted RBP18.5■□□□□ 0.55
VIM-208ENST00000497849 LILRA6Q6PI73 481 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 PHKBQ93100 1093 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 GJA10Q969M2 543 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 B3GALT6Q96L58 329 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 NLRP4Q96MN2 994 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 OSBPL6Q9BZF3 934 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 LSG1Q9H089 658 aaKnown RBP18.5■□□□□ 0.55
VIM-208ENST00000497849 ZMYND12Q9H0C1 365 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 UNC45AQ9H3U1 944 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 PARD6AQ9NPB6 346 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 ZSCAN32Q9NX65 697 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 TDRD15B5MCY1 1934 aaKnown RBP18.5■□□□□ 0.55
VIM-208ENST00000497849 BAHCC1Q9P281 2608 aa18.5■□□□□ 0.55
VIM-208ENST00000497849 ESYT2A0FGR8 921 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 FAM170BA6NMN3 283 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 MAFO75444 373 aaPredicted RBP18.49■□□□□ 0.55
VIM-208ENST00000497849 CDC27P30260 824 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 HOXA11P31270 313 aaPredicted RBP18.49■□□□□ 0.55
VIM-208ENST00000497849 SFNP31947 248 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 OR1G1P47890 313 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 JAK3P52333 1124 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 PRKCQQ04759 706 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 UBXN2BQ14CS0 331 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 PFKFB3Q16875 520 aaPredicted RBP18.49■□□□□ 0.55
VIM-208ENST00000497849 SLC44A4Q53GD3 710 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 XKR3Q5GH77 459 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 REXO1Q8N1G1 1221 aaKnown RBP18.49■□□□□ 0.55
VIM-208ENST00000497849 SLC5A5Q92911 643 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 SECISBP2LQ93073 1101 aaKnown RBP18.49■□□□□ 0.55
VIM-208ENST00000497849 RIT2Q99578 217 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 LTB4R2Q9NPC1 389 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 USP18Q9UMW8 372 aa18.49■□□□□ 0.55
VIM-208ENST00000497849 ZFP37Q9Y6Q3 630 aaPredicted RBP18.49■□□□□ 0.55
VIM-208ENST00000497849 ZBTB43O43298 467 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 CD72P21854 359 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 FSHRP23945 695 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 DSC1Q08554 894 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 NECTIN1Q15223 517 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 ERICH6BQ5W0A0 696 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 CREB3L3Q68CJ9 461 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 TSSK4Q6SA08 328 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 GLYCTKQ8IVS8 523 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 SMG8Q8ND04 991 aaKnown RBP18.48■□□□□ 0.55
VIM-208ENST00000497849 MINDY3Q9H8M7 445 aa18.48■□□□□ 0.55
VIM-208ENST00000497849 GAS7O60861 476 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 ZMYND10O75800 440 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 NCLP19338 710 aaKnown RBP18.47■□□□□ 0.55
VIM-208ENST00000497849 NTHL1P78549 312 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 TCEANC2Q96MN5 208 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 MBOAT7Q96N66 472 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 GPR62Q9BZJ7 368 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 C6orf50Q9HD87 102 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 MIOSQ9NXC5 875 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 CDH7Q9ULB5 785 aa18.47■□□□□ 0.55
VIM-208ENST00000497849 TBC1D4O60343 1298 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 RPL17P18621 184 aaKnown RBP18.46■□□□□ 0.55
VIM-208ENST00000497849 MAGEA9P43362 315 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 LRCH2Q5VUJ6 765 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 GRASPQ7Z6J2 395 aaPredicted RBP18.46■□□□□ 0.55
VIM-208ENST00000497849 CLDN23Q96B33 292 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 GAD1Q99259 594 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 TEKT3Q9BXF9 490 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 RNF39Q9H2S5 420 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 FNIP2Q9P278 1114 aa18.46■□□□□ 0.55
VIM-208ENST00000497849 NOTCH4Q99466 2003 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 ARL5CA6NH57 179 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 GOLGA8AA7E2F4 631 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 GOLGA8BA8MQT2 603 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 PSMD10O75832 226 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 TARSP26639 723 aaKnown RBP18.45■□□□□ 0.54
VIM-208ENST00000497849 EXOSC10Q01780 885 aaKnown RBP18.45■□□□□ 0.54
VIM-208ENST00000497849 FZD5Q13467 585 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 B3GNT9Q6UX72 402 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 RSPO2Q6UXX9 243 aaPredicted RBP18.45■□□□□ 0.54
VIM-208ENST00000497849 ANO5Q75V66 913 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 MIER3Q7Z3K6 550 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 GPR65Q8IYL9 337 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms