RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 NME8Q8N427 588 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 CAPNS2Q96L46 248 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 FAM49AQ9H0Q0 323 aaPredicted RBP9.06□□□□□ -0.96
USP54-215ENST00000497106 NHEJ1Q9H9Q4 299 aaPredicted RBP9.06□□□□□ -0.96
USP54-215ENST00000497106 GUCA1BQ9UMX6 200 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 GSTTP1A0A1W2PQM5 241 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 TTC26A0AVF1 554 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 KBTBD13C9JR72 458 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 OGTO15294 1046 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 ERLIN1O75477 346 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 INSRRP14616 1297 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 PSEN2P49810 448 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 POU5F1BQ06416 359 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 LAMTOR4Q0VGL1 99 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 MFSD10Q14728 455 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 ARHGAP44Q17R89 818 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 MPZL3Q6UWV2 235 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 STK33Q9BYT3 514 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 ACBD3Q9H3P7 528 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 DHX33Q9H6R0 707 aaKnown RBP9.06□□□□□ -0.96
USP54-215ENST00000497106 RRAGDQ9NQL2 400 aaPredicted RBP9.06□□□□□ -0.96
USP54-215ENST00000497106 DNAJC12Q9UKB3 198 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 PYCARDQ9ULZ3 195 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 GOLGA8IPA6NC78 632 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 GOLGA8JA6NMD2 632 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 EIF3CLB5ME19 914 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 TUBBP07437 444 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 PMS1P54277 932 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 SLC8A3P57103 927 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 GPS2Q13227 327 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 ZNF569Q5MCW4 686 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 ZBTB33Q86T24 672 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 ARRDC4Q8NCT1 418 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 PPP1R13BQ96KQ4 1090 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 EIF3CQ99613 913 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 GPRC5CQ9NQ84 441 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 CLTAP09496 248 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 H2AFZP0C0S5 128 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 MCF2P10911 925 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 KLRC1P26715 233 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 DUOXA2Q1HG44 320 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 H2AFVQ71UI9 128 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 NT5DC4Q86YG4 428 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 TMEM161BQ8NDZ6 487 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 UBXN4Q92575 508 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 EEF2KMTQ96G04 330 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 RPS6KC1Q96S38 1066 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 TSPAN18Q96SJ8 248 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 DNAJC7Q99615 494 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 LZTFL1Q9NQ48 299 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 APEX2Q9UBZ4 518 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 ASTN1O14525 1302 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 MED7O43513 233 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 FKTNO75072 461 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 MMP3P08254 477 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 KRT19P08727 400 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 MAP2K2P36507 400 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 VAV2P52735 878 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 ETF1P62495 437 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 FSCN1Q16658 493 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 BEST2Q8NFU1 509 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 NTPCRQ9BSD7 190 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 UBE2TQ9NPD8 197 aaPredicted RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 SPTLC3Q9NUV7 552 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 ATAD5Q96QE3 1844 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 RBM47A0AV96 593 aaKnown RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 ACKR2O00590 384 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 YY1P25490 414 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 TNNC1P63316 161 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 TBX2Q13207 712 aaPredicted RBP9.05□□□□□ -0.96
USP54-215ENST00000497106 ZCWPW2Q504Y3 356 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 GNASQ5JWF2 1037 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 NOTUMQ6P988 496 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 GOLGA6L1Q8N7Z2 621 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 TC2NQ8N9U0 490 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 CREBZFQ9NS37 354 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 FBXL5Q9UKA1 691 aa9.05□□□□□ -0.96
USP54-215ENST00000497106 LRRC53A6NM62 1247 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 SKIP12755 728 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 KIF11P52732 1056 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 POU5F1Q01860 360 aaKnown RBP9.04□□□□□ -0.96
USP54-215ENST00000497106 ZFYVE27Q5T4F4 411 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 TRIM72Q6ZMU5 477 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 SAAL1Q96ER3 474 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 RPGRIP1Q96KN7 1286 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 SYNCQ9H7C4 482 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 DUSP11O75319 330 aaKnown RBP9.04□□□□□ -0.96
USP54-215ENST00000497106 ITGBL1O95965 494 aaPredicted RBP9.04□□□□□ -0.96
USP54-215ENST00000497106 GYPCP04921 128 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 GLRA2P23416 452 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 SOX5P35711 763 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 ARL2P36404 184 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 TM4SF4P48230 202 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 GCLMP48507 274 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 APLP1P51693 650 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 CCZ1BP86790 482 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 CCZ1P86791 482 aaPredicted RBP9.04□□□□□ -0.96
USP54-215ENST00000497106 FAM43BQ6ZT52 329 aaPredicted RBP9.04□□□□□ -0.96
USP54-215ENST00000497106 ACAP3Q96P50 834 aa9.04□□□□□ -0.96
USP54-215ENST00000497106 CGRRF1Q99675 332 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms