RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	FASTKD5	Q7L8L6	764 aa	Known RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	MAMDC2	Q7Z304	686 aa	Predicted RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	SPRED2	Q7Z698	418 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	DZIP1	Q86YF9	867 aa	Known RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	TCEAL8	Q8IYN2	117 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	FIBCD1	Q8N539	461 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	DTWD1	Q8N5C7	304 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	MFSD2A	Q8NA29	543 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	GALNT6	Q8NCL4	622 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	PI4K2B	Q8TCG2	481 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	MAGEB10	Q96LZ2	347 aa	Predicted RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	PSMG3-AS1	Q96PY0	264 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	TTC1	Q99614	292 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	SPOCK3	Q9BQ16	436 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	PRDM14	Q9GZV8	571 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	ASCC2	Q9H1I8	757 aa	Predicted RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	IFT22	Q9H7X7	185 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	CYP26B1	Q9NR63	512 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	USP40	Q9NVE5	1235 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	HMG20B	Q9P0W2	317 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	DDX20	Q9UHI6	824 aa	Known RBP	5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	DENND2A	Q9ULE3	1009 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	TNN	Q9UQP3	1299 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	PCDHA9	Q9Y5H5	950 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	MTCH2	Q9Y6C9	303 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	FAM186A	A6NE01	2351 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	MYH7	P12883	1935 aa		5.13	□□□□□ -1.59
VPS52-222	ENST00000495981	ANKRD11	Q6UB99	2663 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981		K7ESF4	209 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CBX4	O00257	560 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	DNM1L	O00429	736 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	KIAA0355	O15063	1070 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	OIP5	O43482	229 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	WIPF1	O43516	503 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	ZEB2	O60315	1214 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CTNND1	O60716	968 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CAND2	O75155	1236 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	LRRN2	O75325	713 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	EIF3J	O75822	258 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	GLRX3	O76003	335 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	SNRPB2	P08579	225 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CT47B1	P0C2W7	299 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	ZKSCAN1	P17029	563 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CYP2C19	P33261	490 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	MCAM	P43121	646 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	DGKG	P49619	791 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	RNF4	P78317	190 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	TFCP2	Q12800	502 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	BIRC2	Q13490	618 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	PICALM	Q13492	652 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	PPP2R5D	Q14738	602 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	PIK3R6	Q5UE93	754 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	LETMD1	Q6P1Q0	360 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	TMED8	Q6PL24	325 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	DYM	Q7RTS9	669 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	ADGRA1	Q86SQ6	560 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CDH24	Q86UP0	819 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	SMYD4	Q8IYR2	804 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	FMR1NB	Q8N0W7	255 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	ZGPAT	Q8N5A5	531 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	LPAR1	Q92633	364 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	NSUN4	Q96CB9	384 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	CCDC140	Q96MF4	163 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	ASPN	Q9BXN1	380 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	NOL6	Q9H6R4	1146 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	VTA1	Q9NP79	307 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	AASDHPPT	Q9NRN7	309 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	RBPJL	Q9UBG7	517 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	MORF4L1	Q9UBU8	362 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	NOB1	Q9ULX3	412 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	DIS3	Q9Y2L1	958 aa	Known RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	GPR55	Q9Y2T6	319 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	PCDHB12	Q9Y5F1	795 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	FLT1	P17948	1338 aa		5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	EP300	Q09472	2414 aa	Predicted RBP	5.12	□□□□□ -1.59
VPS52-222	ENST00000495981	COL11A1	P12107	1806 aa	Predicted RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	DMXL1	Q9Y485	3027 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	PNMA6E	A0A0J9YXQ4	647 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ARVCF	O00192	962 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	RNGTT	O60942	597 aa	Known RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	RFPL1	O75677	317 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	F2	P00734	622 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	TRIM27	P14373	513 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ZEB1	P37275	1124 aa	Predicted RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ECI1	P42126	302 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ASPA	P45381	313 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	RARS	P54136	660 aa	Known RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	HMGCS2	P54868	508 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ERVK-21	P61565	698 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	FPGS	Q05932	587 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	TCF15	Q12870	199 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	MVP	Q14764	893 aa	Known RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	MLC1	Q15049	377 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	PRAMEF19	Q5SWL8	479 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	SYCP2L	Q5T4T6	812 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	CCDC129	Q6ZRS4	1044 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ACAD11	Q709F0	780 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	USP53	Q70EK8	1073 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	5.11	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms