RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 MIGA2Q7L4E1 593 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 RIBC1Q8N443 379 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ASAP3Q8TDY4 903 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TGFBRAP1Q8WUH2 860 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 CELF1Q92879 486 aaKnown RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 CD101Q93033 1021 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TSC22D3Q99576 134 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 UBA5Q9GZZ9 404 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 OLFML3Q9NRN5 406 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TMOD4Q9NZQ9 345 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 DNAJC12Q9UKB3 198 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 DPPA5A6NC42 116 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TBX3O15119 743 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 HNRNPCL1O60812 293 aaKnown RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 MED24O75448 989 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TTC4O95801 387 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 BRAFP15056 766 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 MAN1A1P33908 653 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 FMO5P49326 533 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 SLC18A1P54219 525 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 RPS8P62241 208 aaKnown RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 SIX1Q15475 284 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 SLC15A2Q16348 729 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TSNAXIP1Q2TAA8 658 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 SLC13A5Q86YT5 568 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 CCDC105Q8IYK2 499 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ZDHHC14Q8IZN3 488 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 GALNT15Q8N3T1 639 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ERMNQ8TAM6 284 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 MGARPQ8TDB4 240 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 FBXO41Q8TF61 875 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ZBTB10Q96DT7 871 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 REEP2Q9BRK0 252 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ARHGEF10LQ9HCE6 1279 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 AAASQ9NRG9 546 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 PAPOLBQ9NRJ5 636 aaKnown RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 NKIRAS1Q9NYS0 192 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TFCP2L1Q9NZI6 479 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 APEX2Q9UBZ4 518 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 USH1CQ9Y6N9 552 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 UBE4BO95155 1302 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 KAT6BQ8WYB5 2073 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 TP73O15350 636 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 CDH16O75309 829 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 DCTN3O75935 186 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 GAP43P17677 238 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 TAC1P20366 129 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 RPA1P27694 616 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 CDC25CP30307 473 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 CASP4P49662 377 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 RAD23BP54727 409 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 IL9RQ01113 521 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 KLC1Q07866 573 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 CTTNQ14247 550 aaKnown RBP10.38□□□□□ -0.75
SYNE1-230ENST00000495090 PDCD2Q16342 344 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-230ENST00000495090 KCTD19Q17RG1 926 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-230ENST00000495090 RELL1Q8IUW5 271 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 FAM186BQ8IYM0 893 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 UHMK1Q8TAS1 419 aaKnown RBP10.38□□□□□ -0.75
SYNE1-230ENST00000495090 KRT35Q92764 455 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 ZHX3Q9H4I2 956 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 TLE6Q9H808 572 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 NKX1-2Q9UD57 310 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-230ENST00000495090 TRIM33Q9UPN9 1127 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 DNM3Q9UQ16 869 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 RTCBQ9Y3I0 505 aaKnown RBP10.38□□□□□ -0.75
SYNE1-230ENST00000495090 DOT1LQ8TEK3 1739 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 TAF1P21675 1872 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 CDK5RAP2Q96SN8 1893 aa10.38□□□□□ -0.75
SYNE1-230ENST00000495090 ANKRD63C9JTQ0 380 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MPHOSPH10O00566 681 aaKnown RBP10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MAPK13O15264 365 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 ECE2O60344 883 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 RFC4P35249 363 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 GPC5P78333 572 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 SPIRE1Q08AE8 756 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 NR1H3Q13133 447 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MPP2Q14168 576 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 UBE2SQ16763 222 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 IRGCQ6NXR0 463 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 ANKRD35Q8N283 1001 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 ANKRD42Q8N9B4 389 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 FAM13CQ8NE31 585 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 AGPAT1Q99943 283 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 FAM167BQ9BTA0 163 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 DDX23Q9BUQ8 820 aaKnown RBP10.37□□□□□ -0.75
SYNE1-230ENST00000495090 RTFDC1Q9BY42 306 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-230ENST00000495090 PITPNM3Q9BZ71 974 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 INTS2Q9H0H0 1204 aaKnown RBP10.37□□□□□ -0.75
SYNE1-230ENST00000495090 KCNK9Q9NPC2 374 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 UBN1Q9NPG3 1134 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 TAS2R14Q9NYV8 317 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 USP20Q9Y2K6 914 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 TGFB1I1O43294 461 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 RTN3O95197 1032 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-230ENST00000495090 CREB1P16220 341 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 ALDH3A1P30838 453 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 PCK1P35558 622 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 RPS6KA3P51812 740 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MXRA7P84157 204 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms