RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 VPS52Q8N1B4 723 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 RABGGTAQ92696 567 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 PPP2R3CQ969Q6 453 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 IGSF21Q96ID5 467 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 KLK14Q9P0G3 267 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 PUF60Q9UHX1 559 aaKnown RBP11.76□□□□□ -0.53
NELFE-213ENST00000494956 LZTS1Q9Y250 596 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 C5orf42Q9H799 3197 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 TRIP11Q15643 1979 aa11.76□□□□□ -0.53
NELFE-213ENST00000494956 C2orf71A6NGG8 1288 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 ARL5CA6NH57 179 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 CXCL14O95715 111 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 AXLP30530 894 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 ATP2C1P98194 919 aaPredicted RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 POU5F1BQ06416 359 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 SMAD4Q13485 552 aaKnown RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 KCNC3Q14003 757 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 SMAD2Q15796 467 aaKnown RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 PUS10Q3MIT2 529 aaKnown RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 EEF1DP3Q658K8 133 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 HAUS3Q68CZ6 603 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 CDCA2Q69YH5 1023 aaPredicted RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 SMRP1Q8NCR6 262 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 MCPH1Q8NEM0 835 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 SPDYE1Q8NFV5 336 aaPredicted RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 URGCPQ8TCY9 931 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 TMEM169Q96HH4 297 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 PNMA5Q96PV4 448 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 RUSC1Q9BVN2 902 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 BACH2Q9BYV9 841 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 ZBP1Q9H171 429 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 C11orf16Q9NQ32 467 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 PRG3Q9Y2Y8 225 aaPredicted RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 USP15Q9Y4E8 981 aaPredicted RBP11.75□□□□□ -0.53
NELFE-213ENST00000494956 MYH11P35749 1972 aa11.75□□□□□ -0.53
NELFE-213ENST00000494956 MUC3AQ02505 3323 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 VWA3AA6NCI4 1184 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 SFI1A8K8P3 1242 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 NRP1O14786 923 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 CLASP2O75122 1294 aaKnown RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 EYA4O95677 639 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 PRKCBP05771 671 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 WEE2P0C1S8 567 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 SP100P23497 879 aaPredicted RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 MCM2P49736 904 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 GRIN1Q05586 938 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 RAD51AP2Q09MP3 1159 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 COASYQ13057 564 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 PDIA5Q14554 519 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 SMC1AQ14683 1233 aaKnown RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 RILPL1Q5EBL4 403 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 SYCE2Q6PIF2 218 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 DTHD1Q6ZMT9 781 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 TAS1R1Q7RTX1 841 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 DDX53Q86TM3 631 aaKnown RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 ADHFE1Q8IWW8 467 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 COLGALT2Q8IYK4 626 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 MRPL43Q8N983 215 aaKnown RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 GSTCDQ8NEC7 633 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 DEPTORQ8TB45 409 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 FAM193BQ96PV7 902 aaPredicted RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 NFKBIZQ9BYH8 718 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 TRIM6Q9C030 488 aaPredicted RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 CCDC113Q9H0I3 377 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 FZD8Q9H461 694 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 PDZD7Q9H5P4 517 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 NGRNQ9NPE2 291 aaKnown RBP11.74□□□□□ -0.53
NELFE-213ENST00000494956 MARCH5Q9NX47 278 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 PARP2Q9UGN5 583 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 KIF3AQ9Y496 699 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 BDP1A6H8Y1 2624 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 CNTNAP2Q9UHC6 1331 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 PLXNA3P51805 1871 aa11.74□□□□□ -0.53
NELFE-213ENST00000494956 A0A1B0GUA9 196 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 C19orf67A6NJJ6 358 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 HIP1RO75146 1068 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 MYBP10242 640 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 PRPHP41219 470 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 NAMPTP43490 491 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 OR1G1P47890 313 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 NCBP1Q09161 790 aaKnown RBP11.73□□□□□ -0.53
NELFE-213ENST00000494956 MAPK7Q13164 816 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 CUL4AQ13619 759 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 TMEM132AQ24JP5 1023 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 NT5DC1Q5TFE4 455 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 KRT79Q5XKE5 535 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 PDE12Q6L8Q7 609 aaKnown RBP11.73□□□□□ -0.53
NELFE-213ENST00000494956 RINT1Q6NUQ1 792 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 ANKRD54Q6NXT1 300 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 SLC27A1Q6PCB7 646 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 ZBTB8OSQ8IWT0 167 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 DAW1Q8N136 415 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 C12orf76Q8N812 135 aaPredicted RBP11.73□□□□□ -0.53
NELFE-213ENST00000494956 LRRC15Q8TF66 581 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 B3GALT6Q96L58 329 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 S1PR5Q9H228 398 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 PRMT7Q9NVM4 692 aaPredicted RBP11.73□□□□□ -0.53
NELFE-213ENST00000494956 SNTG2Q9NY99 539 aa11.73□□□□□ -0.53
NELFE-213ENST00000494956 FAN1Q9Y2M0 1017 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms