RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 KLHL23Q8NBE8 558 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 COLGALT1Q8NBJ5 622 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 SMG8Q8ND04 991 aaKnown RBP17.55■□□□□ 0.4
LIME1-209ENST00000494776 LRRC15Q8TF66 581 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 P2RX5Q93086 422 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 MRPL38Q96DV4 380 aaKnown RBP17.55■□□□□ 0.4
LIME1-209ENST00000494776 REEP2Q9BRK0 252 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 TMEM134Q9H6X4 195 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 CWH43Q9H720 699 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 ALG13Q9NP73 1137 aaKnown RBP17.55■□□□□ 0.4
LIME1-209ENST00000494776 USP20Q9Y2K6 914 aa17.55■□□□□ 0.4
LIME1-209ENST00000494776 OFD1O75665 1012 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 CSPG5O95196 566 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 KRT85P78386 507 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 STRN3Q13033 797 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 LRRC55Q6ZSA7 311 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 APBB1IPQ7Z5R6 666 aaPredicted RBP17.54■□□□□ 0.4
LIME1-209ENST00000494776 MYCT1Q8N699 235 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 SPIRE2Q8WWL2 714 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 ZNF558Q96NG5 402 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 FAM193BQ96PV7 902 aaPredicted RBP17.54■□□□□ 0.4
LIME1-209ENST00000494776 LMAN2LQ9H0V9 348 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 PDZD7Q9H5P4 517 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 KANSL3Q9P2N6 904 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 PARP2Q9UGN5 583 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 PLAGL2Q9UPG8 496 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 ZDHHC9Q9Y397 364 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 HES2Q9Y543 173 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 COL4A4P53420 1690 aaPredicted RBP17.54■□□□□ 0.4
LIME1-209ENST00000494776 RALGAPA2Q2PPJ7 1873 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 FNDC1Q4ZHG4 1894 aaPredicted RBP17.54■□□□□ 0.4
LIME1-209ENST00000494776 NLRC5Q86WI3 1866 aa17.54■□□□□ 0.4
LIME1-209ENST00000494776 CHD7Q9P2D1 2997 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 TTLL13PA6NNM8 815 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 H0YCG3 227 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 GRM6O15303 877 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 ALDH7A1P49419 539 aaKnown RBP17.53■□□□□ 0.4
LIME1-209ENST00000494776 GIT2Q14161 759 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 ATF7IP2Q5U623 682 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 KCNT2Q6UVM3 1135 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 DYMQ7RTS9 669 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 NTPCRQ9BSD7 190 aaKnown RBP17.53■□□□□ 0.4
LIME1-209ENST00000494776 MRPL4Q9BYD3 311 aaKnown RBP17.53■□□□□ 0.4
LIME1-209ENST00000494776 GBP3Q9H0R5 595 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 RNF39Q9H2S5 420 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 NXF3Q9H4D5 531 aaKnown RBP17.53■□□□□ 0.4
LIME1-209ENST00000494776 PARVGQ9HBI0 331 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 FAM13BQ9NYF5 915 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 ARHGAP28Q9P2N2 729 aa17.53■□□□□ 0.4
LIME1-209ENST00000494776 A0A0C4DFX4 3053 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 ZC3H11AO75152 810 aaKnown RBP eCLIP17.52■□□□□ 0.4
LIME1-209ENST00000494776 FGF18O76093 207 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 ITGB1P05556 798 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 AKAP5P24588 427 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 TIGD5Q53EQ6 642 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 NT5DC1Q5TFE4 455 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 SPATA32Q96LK8 384 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 TBC1D13Q9NVG8 400 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 RCOR1Q9UKL0 485 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 PCDHA7Q9UN72 937 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 GIT1Q9Y2X7 761 aa17.52■□□□□ 0.4
LIME1-209ENST00000494776 A0A087X0B3 334 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 ARL5CA6NH57 179 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 POMCP01189 267 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 EDN1P05305 212 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 PPM1AP35813 382 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 PBX3P40426 434 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 MLH1P40692 756 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 NUCB2P80303 420 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 KRT17Q04695 432 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 DCAF4L1Q3SXM0 396 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 SHC4Q6S5L8 630 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 TMEM161BQ8NDZ6 487 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 SPPL3Q8TCT6 385 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 MICAL1Q8TDZ2 1067 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 POF1BQ8WVV4 589 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 DDX12PQ92771 950 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 BICD1Q96G01 975 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 RPS6KC1Q96S38 1066 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 GAD1Q99259 594 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 TCHPQ9BT92 498 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 SPG21Q9NZD8 308 aa17.51■□□□□ 0.39
LIME1-209ENST00000494776 PUF60Q9UHX1 559 aaKnown RBP17.51■□□□□ 0.39
LIME1-209ENST00000494776 CARNS1A5YM72 827 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 K7ENM7 598 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 TRAK2O60296 914 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 MAPTP10636 758 aaKnown RBP17.5■□□□□ 0.39
LIME1-209ENST00000494776 BCAR1P56945 870 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 AXDND1Q5T1B0 1012 aaPredicted RBP17.5■□□□□ 0.39
LIME1-209ENST00000494776 EEF1DP3Q658K8 133 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 TAS1R3Q7RTX0 852 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 HAUS6Q7Z4H7 955 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 FAM178BQ8IXR5 827 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 IQUBQ8NA54 791 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 DHX58Q96C10 678 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 ACO2Q99798 780 aaKnown RBP17.5■□□□□ 0.39
LIME1-209ENST00000494776 TARS2Q9BW92 718 aaKnown RBP17.5■□□□□ 0.39
LIME1-209ENST00000494776 LRRC27Q9C0I9 530 aa17.5■□□□□ 0.39
LIME1-209ENST00000494776 NSUN3Q9H649 340 aaKnown RBP17.5■□□□□ 0.39
LIME1-209ENST00000494776 NRDE2Q9H7Z3 1164 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms