RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ANKRD65E5RJM6 399 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 NR3C2P08235 984 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 DMP1Q13316 513 aaPredicted RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 MESDQ14696 234 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SRLQ86TD4 932 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 NOP9Q86U38 636 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SLC47A2Q86VL8 602 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 RHOT2Q8IXI1 618 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 KREMEN1Q96MU8 473 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 TIPINQ9BVW5 301 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 PPP1R1BQ9UD71 204 aaPredicted RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 HACL1Q9UJ83 578 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 UTP11Q9Y3A2 253 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 PCDHA10Q9Y5I2 948 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 GJA3Q9Y6H8 435 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 TULP2O00295 520 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 PPARDQ03181 441 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 PDCLQ13371 301 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 VSIG10LQ86VR7 867 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 TMEM174Q8WUU8 243 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 BSNDQ8WZ55 320 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 ALG3Q92685 438 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 VTI1AQ96AJ9 217 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 TRIM51Q9BSJ1 452 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 TOPORSQ9NS56 1045 aaPredicted RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 DIS3Q9Y2L1 958 aaKnown RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 TELO2Q9Y4R8 837 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 ATMINO43313 823 aaPredicted RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 ZEB2O60315 1214 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 RTN2O75298 545 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 CHRNB2P17787 502 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 MFAP3P55082 362 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 SNRPFP62306 86 aaKnown RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 SNRNP48Q6IEG0 339 aaKnown RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 SWSAP1Q6NVH7 229 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 OTUD6AQ7L8S5 288 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 CD302Q8IX05 232 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 MICALL2Q8IY33 904 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 EIF1ADQ8N9N8 165 aaKnown RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 BCAS4Q8TDM0 211 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 UBLCP1Q8WVY7 318 aaPredicted RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 LRRC45Q96CN5 670 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 CARD9Q9H257 536 aa12.09□□□□□ -0.47
CHMP3-209ENST00000494623 TTC7AQ9ULT0 858 aaPredicted RBP12.09□□□□□ -0.47
CHMP3-209ENST00000494623 MYO1CO00159 1063 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 TRIM66O15016 1216 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 MAPK13O15264 365 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 EIF3HO15372 352 aaKnown RBP eCLIP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 MMEP08473 750 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 DLATP10515 647 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 CCND2P30279 289 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 CTNNA1P35221 906 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 CCT5P48643 541 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 BACE1P56817 501 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 UAP1Q16222 522 aaPredicted RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 DALRD3Q5D0E6 543 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 KRT39Q6A163 491 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 DHX37Q8IY37 1157 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 C10orf67Q8IYJ2 551 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 FAM71AQ8IYT1 594 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 SAMD3Q8N6K7 520 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 PARD3BQ8TEW8 1205 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 POMGNT1Q8WZA1 660 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 KRT35Q92764 455 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 ERVK-5Q9HDB9 667 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 GOLGA6L10A6NI86 522 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 ZNF862O60290 1169 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 ZNF280AP59817 542 aaPredicted RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 IRX5P78411 483 aaPredicted RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 SKOR1P84550 965 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 POU5F1Q01860 360 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 EPS8L1Q8TE68 723 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 GLG1Q92896 1179 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 BTBD6Q96KE9 485 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 ATP6V1G3Q96LB4 118 aa12.08□□□□□ -0.48
CHMP3-209ENST00000494623 NAP1L3Q99457 506 aaPredicted RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 BCCIPQ9P287 314 aaKnown RBP eCLIP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 CNOT7Q9UIV1 285 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 NOCTQ9UK39 431 aaKnown RBP12.08□□□□□ -0.48
CHMP3-209ENST00000494623 GOLGA6L10A0A0M3HER8 536 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 BHMG1C9JSJ3 638 aaPredicted RBP12.07□□□□□ -0.48
CHMP3-209ENST00000494623 CLSTN1O94985 981 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 COMTP21964 271 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 MARCKSL1P49006 195 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 GMPSP49915 693 aaPredicted RBP12.07□□□□□ -0.48
CHMP3-209ENST00000494623 HMGCS2P54868 508 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 DR1Q01658 176 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 MAP4K3Q8IVH8 894 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 SLC17A8Q8NDX2 589 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 TAS1R2Q8TE23 839 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 FAM84AQ96KN4 292 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 GRIN2DO15399 1336 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 UTRNP46939 3433 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 NR1D1P20393 614 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 PTENP60484 403 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 GUCY1A3Q02108 690 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 DHX9Q08211 1270 aaKnown RBP12.07□□□□□ -0.48
CHMP3-209ENST00000494623 POTEAQ6S8J7 498 aa12.07□□□□□ -0.48
CHMP3-209ENST00000494623 UBL4BQ8N7F7 174 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms