RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 DENND3A2RUS2 1198 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 CSDE1O75534 798 aaKnown RBP11.32□□□□□ -0.6
SKA1-204ENST00000488454 GCNT3O95395 438 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 FGBP02675 491 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 PRKCBP05771 671 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 NCKAP1LP55160 1127 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 COASYQ13057 564 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 ALCAMQ13740 583 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 IKBKEQ14164 716 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 SKOR2Q2VWA4 1001 aaPredicted RBP11.32□□□□□ -0.6
SKA1-204ENST00000488454 KMT5BQ4FZB7 885 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 FAM26FQ5R3K3 315 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 CDCA2Q69YH5 1023 aaPredicted RBP11.32□□□□□ -0.6
SKA1-204ENST00000488454 ZNF720Q7Z2F6 126 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 HAUS6Q7Z4H7 955 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 TMEM161BQ8NDZ6 487 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 DBF4BQ8NFT6 615 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 TMEM40Q8WWA1 233 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 SYAP1Q96A49 352 aaPredicted RBP11.32□□□□□ -0.6
SKA1-204ENST00000488454 KIFC3Q9BVG8 833 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 FTHL17Q9BXU8 183 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 NUP62CLQ9H1M0 184 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 CLSTN2Q9H4D0 955 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 AGO3Q9H9G7 860 aaKnown RBP11.32□□□□□ -0.6
SKA1-204ENST00000488454 IL23AQ9NPF7 189 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 OLFML3Q9NRN5 406 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 PADI3Q9ULW8 664 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 PCDHA5Q9Y5H7 936 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 WDR81Q562E7 1941 aa11.32□□□□□ -0.6
SKA1-204ENST00000488454 MKI67P46013 3256 aaKnown RBP11.31□□□□□ -0.6
SKA1-204ENST00000488454 H0YGN5 161 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 ACKR2O00590 384 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 KIF20AO95235 890 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 CXCL10P02778 98 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 ACRP10323 421 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 FGFR4P22455 802 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 NMT1P30419 496 aaKnown RBP11.31□□□□□ -0.6
SKA1-204ENST00000488454 AXLP30530 894 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 MBTD1Q05BQ5 628 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 PRPF4BQ13523 1007 aaKnown RBP11.31□□□□□ -0.6
SKA1-204ENST00000488454 MBTPS1Q14703 1052 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 KCNB1Q14721 858 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 PLEKHG4Q58EX7 1191 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 CNKSR3Q6P9H4 555 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 APBB1IPQ7Z5R6 666 aaPredicted RBP11.31□□□□□ -0.6
SKA1-204ENST00000488454 FAM228AQ86W67 206 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 SYCP3Q8IZU3 236 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 BICD1Q96G01 975 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 PRIMPOLQ96LW4 560 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 MRPL4Q9BYD3 311 aaKnown RBP11.31□□□□□ -0.6
SKA1-204ENST00000488454 MTIF3Q9H2K0 278 aaKnown RBP11.31□□□□□ -0.6
SKA1-204ENST00000488454 FZD8Q9H461 694 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 ST6GALNAC4Q9H4F1 302 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 MINDY3Q9H8M7 445 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 ERVK-5Q9HDB9 667 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 SLC39A2Q9NP94 309 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 CHST12Q9NRB3 414 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 ARHGAP28Q9P2N2 729 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 EXOC7Q9UPT5 735 aa11.31□□□□□ -0.6
SKA1-204ENST00000488454 TRIP12Q14669 1992 aaPredicted RBP11.3□□□□□ -0.6
SKA1-204ENST00000488454 ABHD14A-ACY1A0A1B0GW23 586 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 KLRC4O43908 158 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 EFCAB14O75071 495 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 RHOBTB3O94955 611 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 MAGEA10P43363 369 aaPredicted RBP11.3□□□□□ -0.6
SKA1-204ENST00000488454 GTF2BQ00403 316 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 GPNMBQ14956 572 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 FAM187BQ17R55 369 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 CCDC183Q5T5S1 534 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 L1TD1Q5T7N2 865 aaKnown RBP11.3□□□□□ -0.6
SKA1-204ENST00000488454 PSRC1Q6PGN9 363 aaPredicted RBP11.3□□□□□ -0.6
SKA1-204ENST00000488454 ERCC4Q92889 916 aaPredicted RBP11.3□□□□□ -0.6
SKA1-204ENST00000488454 HPS3Q969F9 1004 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 HVCN1Q96D96 273 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 ACCSQ96QU6 501 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 TCHPQ9BT92 498 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 TMEM206Q9H813 350 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 TBX20Q9UMR3 447 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 PIN4Q9Y237 131 aaKnown RBP11.3□□□□□ -0.6
SKA1-204ENST00000488454 LOXHD1Q8IVV2 1947 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 ADGRA3Q8IWK6 1321 aa11.3□□□□□ -0.6
SKA1-204ENST00000488454 TSPAN1O60635 241 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 MYBP10242 640 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 SKIP12755 728 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 MATR3P43243 847 aaKnown RBP eCLIP11.29□□□□□ -0.65e-6■■□□□ 12.5
SKA1-204ENST00000488454 SARSP49591 514 aaKnown RBP11.29□□□□□ -0.6
SKA1-204ENST00000488454 LIG4P49917 911 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 NFKBIBQ15653 356 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 KLHL40Q2TBA0 621 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 ZC2HC1CQ53FD0 456 aaPredicted RBP11.29□□□□□ -0.6
SKA1-204ENST00000488454 TWF2Q6IBS0 349 aaKnown RBP11.29□□□□□ -0.6
SKA1-204ENST00000488454 NOTUMQ6P988 496 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 ZNF365Q70YC5 407 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 KCNN1Q92952 543 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 CCDC51Q96ER9 411 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 ADAM2Q99965 735 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 ADPGKQ9BRR6 497 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 OSBPL7Q9BZF2 842 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 TRIM6Q9C030 488 aaPredicted RBP11.29□□□□□ -0.6
SKA1-204ENST00000488454 UBE2OQ9C0C9 1292 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms