RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 AAASQ9NRG9 546 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 PRMT7Q9NVM4 692 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 ARL5CA6NH57 179 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 CCDC169A6NNP5 214 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 F8W810 466 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 H3BQ06 376 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 ITGA4P13612 1032 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 KCNA5P22460 613 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 GUCY2CP25092 1073 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 LTBRP36941 435 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 UBA7P41226 1012 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 SLC11A1P49279 550 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 DLX2Q07687 328 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 PRPF4BQ13523 1007 aaKnown RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 MCM6Q14566 821 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 COL19A1Q14993 1142 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 SLC27A1Q6PCB7 646 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 RBM23Q86U06 439 aaKnown RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 SYMPKQ92797 1274 aaKnown RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 CCDC51Q96ER9 411 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 IFT74Q96LB3 600 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 VN1R3Q9BXE9 311 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 MRPL9Q9BYD2 267 aaKnown RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 NT5C3AQ9H0P0 336 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 C2orf40Q9H1Z8 148 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 SPG21Q9NZD8 308 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 KLK14Q9P0G3 267 aa15.35■□□□□ 0.05
SYNE1-226ENST00000488376 TFIP11Q9UBB9 837 aaKnown RBP15.35■□□□□ 0.05
SYNE1-226ENST00000488376 FSCN2O14926 492 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 PER2O15055 1255 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 SLC16A4O15374 487 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 HSP90AA1P07900 732 aaKnown RBP15.34■□□□□ 0.05
SYNE1-226ENST00000488376 GALTP07902 379 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 BMP1P13497 986 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 NRIP1P48552 1158 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 SCNN1GP51170 649 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 PLCB3Q01970 1234 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 RNASELQ05823 741 aaKnown RBP15.34■□□□□ 0.05
SYNE1-226ENST00000488376 SLC39A14Q15043 492 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 PPP2R5AQ15172 486 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 MAPK6Q16659 721 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 PLPP4Q5VZY2 271 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 EP400NLQ6ZTU2 488 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 GSTCDQ8NEC7 633 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 MRPS27Q92552 414 aaKnown RBP15.34■□□□□ 0.05
SYNE1-226ENST00000488376 RAD54LQ92698 747 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 PRIMPOLQ96LW4 560 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 ZSCAN16Q9H4T2 348 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-226ENST00000488376 TLR9Q9NR96 1032 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 CLDND1Q9NY35 253 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 ARHGAP28Q9P2N2 729 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 CACNG4Q9UBN1 327 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 COG5Q9UP83 839 aa15.34■□□□□ 0.05
SYNE1-226ENST00000488376 SRPRBQ9Y5M8 271 aaKnown RBP15.34■□□□□ 0.05
SYNE1-226ENST00000488376 A0A087X0B3 334 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 HIDE1A8MVS5 230 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 ACKR2O00590 384 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 TBX10O75333 385 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 ZSCAN22P10073 491 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-226ENST00000488376 NASPP49321 788 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-226ENST00000488376 NCBP1Q09161 790 aaKnown RBP15.33■□□□□ 0.04
SYNE1-226ENST00000488376 CTC1Q2NKJ3 1217 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 GPBP1Q86WP2 473 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 VN1R2Q8NFZ6 395 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-226ENST00000488376 MICAL1Q8TDZ2 1067 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 ADAMTS19Q8TE59 1207 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 AUTS2Q8WXX7 1259 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 PABPC5Q96DU9 382 aaKnown RBP15.33■□□□□ 0.04
SYNE1-226ENST00000488376 CALML4Q96GE6 196 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 CHAMP1Q96JM3 812 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 DRC1Q96MC2 740 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 REEP2Q9BRK0 252 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 TRIM6Q9C030 488 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-226ENST00000488376 KMT5AQ9NQR1 393 aa15.33■□□□□ 0.04
SYNE1-226ENST00000488376 N4BP3O15049 544 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 INPPL1O15357 1258 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 GLP2RO95838 553 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 PLS3P13797 630 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 PPM1AP35813 382 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 ALDH7A1P49419 539 aaKnown RBP15.32■□□□□ 0.04
SYNE1-226ENST00000488376 EFNA5P52803 228 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 UBE3AQ05086 875 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 DMP1Q13316 513 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-226ENST00000488376 CLUL1Q15846 466 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 CSPP1Q1MSJ5 1256 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 TMEM132AQ24JP5 1023 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 LINC00301Q8NCQ3 95 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 CNNM3Q8NE01 707 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 RASSF8Q8NHQ8 419 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 URGCPQ8TCY9 931 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 RABGGTAQ92696 567 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 IGSF21Q96ID5 467 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 TCF25Q9BQ70 676 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 TARS2Q9BW92 718 aaKnown RBP15.32■□□□□ 0.04
SYNE1-226ENST00000488376 CCSER1Q9C0I3 900 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 SNTG2Q9NY99 539 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 PARP2Q9UGN5 583 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 LZTS1Q9Y250 596 aa15.32■□□□□ 0.04
SYNE1-226ENST00000488376 MYO7AQ13402 2215 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms