RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 B4GALT3O60512 393 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 BMP15O95972 392 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 MAPK6Q16659 721 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 RINT1Q6NUQ1 792 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 TMEM184AQ6ZMB5 413 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 KCNK18Q7Z418 384 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 DDX53Q86TM3 631 aaKnown RBP24.04■■□□□ 1.44
COL9A3-211ENST00000477612 RBM23Q86U06 439 aaKnown RBP24.04■■□□□ 1.44
COL9A3-211ENST00000477612 TMEM173Q86WV6 379 aaPredicted RBP24.04■■□□□ 1.44
COL9A3-211ENST00000477612 IFT74Q96LB3 600 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 AK8Q96MA6 479 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 PNMA5Q96PV4 448 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 NT5C3AQ9H0P0 336 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 DNAJB4Q9UDY4 337 aa24.04■■□□□ 1.44
COL9A3-211ENST00000477612 C5orf42Q9H799 3197 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 VWA3AA6NCI4 1184 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 MBTPS2O43462 519 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 COASYQ13057 564 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 PLPP4Q5VZY2 271 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 C1orf186Q6ZWK4 172 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 TMC7Q7Z402 723 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 HACE1Q8IYU2 909 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 MRPL43Q8N983 215 aaKnown RBP24.03■■□□□ 1.44
COL9A3-211ENST00000477612 TRIM6Q9C030 488 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-211ENST00000477612 ENTPD7Q9NQZ7 604 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 HES2Q9Y543 173 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 IRAK3Q9Y616 596 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 TRIP11Q15643 1979 aa24.03■■□□□ 1.44
COL9A3-211ENST00000477612 ARL5CA6NH57 179 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 HIDE1A8MVS5 230 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 PER2O15055 1255 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 ALDH2P05091 517 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 SLC11A1P49279 550 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 NDUFV1P49821 464 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 EFNA5P52803 228 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 SMC1AQ14683 1233 aaKnown RBP24.02■■□□□ 1.44
COL9A3-211ENST00000477612 SMAD2Q15796 467 aaKnown RBP24.02■■□□□ 1.44
COL9A3-211ENST00000477612 DAW1Q8N136 415 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 GSTCDQ8NEC7 633 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 DEPTORQ8TB45 409 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 GAD1Q99259 594 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 TIPINQ9BVW5 301 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 ZBP1Q9H171 429 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 NXF3Q9H4D5 531 aaKnown RBP24.02■■□□□ 1.44
COL9A3-211ENST00000477612 C17orf75Q9HAS0 396 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 MIOSQ9NXC5 875 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 STK39Q9UEW8 545 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 PRKAG3Q9UGI9 489 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 CD207Q9UJ71 328 aa24.02■■□□□ 1.44
COL9A3-211ENST00000477612 TTLL13PA6NNM8 815 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 K7ELQ4 463 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 N4BP3O15049 544 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 NPTXRO95502 500 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 POMCP01189 267 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 PRKCBP05771 671 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 SYT1P21579 422 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 DSC1Q08554 894 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 MAPK7Q13164 816 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 SMAD4Q13485 552 aaKnown RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 PRPF4BQ13523 1007 aaKnown RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 CDR2LQ86X02 465 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 COLGALT2Q8IYK4 626 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 SYT2Q8N9I0 419 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 VN1R2Q8NFZ6 395 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 BCL7CQ8WUZ0 217 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 FAM193BQ96PV7 902 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-211ENST00000477612 PDZD7Q9H5P4 517 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 POLD4Q9HCU8 107 aa24.01■■□□□ 1.43
COL9A3-211ENST00000477612 C2orf71A6NGG8 1288 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 EDN1P05305 212 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 CTSAP10619 480 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 GUCY2CP25092 1073 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 MLH1P40692 756 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 BMS1Q14692 1282 aaKnown RBP24■■□□□ 1.43
COL9A3-211ENST00000477612 TMEM119Q4V9L6 283 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 VPS52Q8N1B4 723 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 SMRP1Q8NCR6 262 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 SNX21Q969T3 373 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 NTPCRQ9BSD7 190 aaKnown RBP24■■□□□ 1.43
COL9A3-211ENST00000477612 RUSC1Q9BVN2 902 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 GBP3Q9H0R5 595 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 TMEM134Q9H6X4 195 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 CD320Q9NPF0 282 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 FAN1Q9Y2M0 1017 aa24■■□□□ 1.43
COL9A3-211ENST00000477612 VPS37CA5D8V6 355 aaPredicted RBP23.99■■□□□ 1.43
COL9A3-211ENST00000477612 NRP1O14786 923 aa23.99■■□□□ 1.43
COL9A3-211ENST00000477612 GIT2Q14161 759 aa23.99■■□□□ 1.43
COL9A3-211ENST00000477612 SF3A1Q15459 793 aaKnown RBP23.99■■□□□ 1.43
COL9A3-211ENST00000477612 DRC1Q96MC2 740 aa23.99■■□□□ 1.43
COL9A3-211ENST00000477612 ZFP42Q96MM3 310 aa23.99■■□□□ 1.43
COL9A3-211ENST00000477612 KCND2Q9NZV8 630 aa23.99■■□□□ 1.43
COL9A3-211ENST00000477612 C19orf67A6NJJ6 358 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 HIP1RO75146 1068 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 CXCL14O95715 111 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 EFEMP2O95967 443 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 AKAP5P24588 427 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 LONP1P36776 959 aaKnown RBP23.98■■□□□ 1.43
COL9A3-211ENST00000477612 NPTX2P47972 431 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 SCNN1GP51170 649 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 SLC12A3P55017 1021 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms