RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MICU3Q86XE3 530 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 RPUSD2Q8IZ73 545 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 FANCBQ8NB91 859 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 IL31RAQ8NI17 732 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 HERVK_113Q902F9 699 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 FAM161BQ96MY7 647 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 SPATA33Q96N06 139 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 GUCD1Q96NT3 240 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 WNT8AQ9H1J5 351 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 RBM28Q9NW13 759 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 ACTL7BQ9Y614 415 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 EYSQ5T1H1 3165 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 MEIS2O14770 477 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 PPFIA4O75335 1185 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 GGPS1O95749 300 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 F2P00734 622 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 ZNF286BP0CG31 522 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 ADH5P11766 374 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 UBA1P22314 1058 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 RFC2P35250 354 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 EXOSC10Q01780 885 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 PTGISQ16647 500 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 ADCK5Q3MIX3 580 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 RASIP1Q5U651 963 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 PCNX4Q63HM2 1172 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 XRRA1Q6P2D8 792 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 APOA5Q6Q788 366 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 RAB11FIP4Q86YS3 637 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 CCDC82Q8N4S0 544 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 C7orf31Q8N865 590 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 RETREG2Q8NC44 543 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 TET1Q8NFU7 2136 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 KAT2BQ92831 832 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 SCLYQ96I15 445 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 SEMA6CQ9H3T2 930 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 PSTPIP2Q9H939 334 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 MLXIPQ9HAP2 919 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 LRRC4CQ9HCJ2 640 aa7.8□□□□□ -1.16
CCDC88A-213ENST00000476903 CDH23Q9H251 3354 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 NOP56O00567 594 aaKnown RBP7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 ZBTB43O43298 467 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 FIBPO43427 364 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 SORBS3O60504 671 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 REC8O95072 547 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 CTSBP07858 339 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 ICAM3P32942 547 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 MRPS9P82933 396 aaKnown RBP7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 FGD1P98174 961 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 SP2Q02086 613 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 NEDD9Q14511 834 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 KIAA0753Q2KHM9 967 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 HSDL1Q3SXM5 330 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 USP17L6PQ6QN14 398 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 OTOP2Q7RTS6 562 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 HEATR3Q7Z4Q2 680 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 NLRX1Q86UT6 975 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 CILP2Q8IUL8 1156 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 SLC17A8Q8NDX2 589 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 GLIS3Q8NEA6 775 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 CAGE1Q8TC20 777 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 PPP1R13LQ8WUF5 828 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 EDEM1Q92611 657 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 TIFAQ96CG3 184 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 TCEANC2Q96MN5 208 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 INPP4AQ96PE3 977 aaPredicted RBP7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 CDX2Q99626 313 aaPredicted RBP7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 ALG1Q9BT22 464 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 BHLHE41Q9C0J9 482 aaPredicted RBP7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 TTYH1Q9H313 450 aaPredicted RBP7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 ACSS3Q9H6R3 686 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 EHMT1Q9H9B1 1298 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 C1GALT1Q9NS00 363 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 RTEL1Q9NZ71 1219 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 GTF2IRD1Q9UHL9 959 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 SLC5A6Q9Y289 635 aa7.79□□□□□ -1.16
CCDC88A-213ENST00000476903 PRUNE2Q8WUY3 3088 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 KLF18A0A0U1RQI7 1052 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 hCG_1642624A0A1W2PR95 340 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 GOLGA8AA7E2F4 631 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 GOLGA8BA8MQT2 603 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 hCG_1984214I3L0E3 225 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 HAS3O00219 553 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 PARNO95453 639 aaKnown RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 RPLP1P05386 114 aaKnown RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 IQCF3P0C7M6 154 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 ACTN1P12814 892 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 HSPA4P34932 840 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 RCAN1P53805 252 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 RAB30Q15771 203 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 UBE2SQ16763 222 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 BLOC1S2Q6QNY1 142 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 METTL7BQ6UX53 244 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 DEFB128Q7Z7B8 93 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 TEX2Q8IWB9 1127 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 ZNF713Q8N859 430 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 GIMAP8Q8ND71 665 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 AFAP1L1Q8TED9 768 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 KCNB2Q92953 911 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 PMEPA1Q969W9 287 aa7.78□□□□□ -1.16
CCDC88A-213ENST00000476903 CDHR1Q96JP9 859 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms