RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PRELPP51888 382 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SLC18A1P54219 525 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 BNIP1Q12981 228 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 PPP2R5CQ13362 524 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CTTNQ14247 550 aaKnown RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 PARP6Q2NL67 630 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CMPK2Q5EBM0 449 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 RNF207Q6ZRF8 634 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 MIGA2Q7L4E1 593 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 TBC1D1Q86TI0 1168 aaPredicted RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 CCDC89Q8N998 374 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 GMCL1P1Q8NEA9 526 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 TBC1D16Q8TBP0 767 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 MDM1Q8TC05 714 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CRYGNQ8WXF5 182 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 GMCL1Q96IK5 515 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ACCSQ96QU6 501 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 THAP2Q9H0W7 228 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 GOLPH3Q9H4A6 298 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 OSGEPQ9NPF4 335 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 AGPAT3Q9NRZ7 376 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ARHGEF35A5YM69 484 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 TGFB1I1O43294 461 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 THAP12O43422 761 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 PPP1R11O60927 126 aaPredicted RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 NPM3O75607 178 aaKnown RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 ABHD2P08910 425 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ATP2A2P16615 1042 aaKnown RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 CCNG1P51959 295 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 GPSM2P81274 684 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ICA1Q05084 483 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 PICALMQ13492 652 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 PTK6Q13882 451 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 GALNTL6Q49A17 601 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SGO2Q562F6 1265 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 NUGGCQ68CJ6 796 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SMYD5Q6GMV2 418 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 TMEM179Q6ZVK1 233 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.56□□□□□ -1.36
HERC4-209ENST00000473533 ZNF720Q7Z2F6 126 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 PRELID2Q8N945 189 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 DHX38Q92620 1227 aaKnown RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 INPP5DQ92835 1189 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CRAMP1Q96RY5 1269 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 KCNK9Q9NPC2 374 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ASIC3Q9UHC3 531 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SMG5Q9UPR3 1016 aaKnown RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 ADGRA3Q8IWK6 1321 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SMIM23A6NLE4 172 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L15C9J2P7 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L13C9JLJ4 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L11C9JVI0 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L18D6R9N7 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L22D6RA61 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L17D6RBQ6 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L19D6RCP7 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L20D6RJB6 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ATP2A1O14983 1001 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SORBS3O60504 671 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ANP32DO95626 131 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CYP1A2P05177 515 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CASP4P49662 377 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L24Q0WX57 530 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 IKQ13123 557 aaPredicted RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 ARHGAP44Q17R89 818 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 TSNAXIP1Q2TAA8 658 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 FAM133BQ5BKY9 247 aaKnown RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 TRAPPC3LQ5T215 181 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SYDE2Q5VT97 1194 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 DCAF12L1Q5VU92 463 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 USP17L6PQ6QN14 398 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 RELL1Q8IUW5 271 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 LARGE2Q8N3Y3 721 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 ZNF564Q8TBZ8 553 aaPredicted RBP6.56□□□□□ -1.36
HERC4-209ENST00000473533 CNKSR1Q969H4 720 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 TEKT1Q969V4 418 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 CFAP57Q96MR6 1250 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 EPB41L4BQ9H329 900 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 SEMA4AQ9H3S1 761 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 VAV3Q9UKW4 847 aa6.56□□□□□ -1.36
HERC4-209ENST00000473533 QSER1Q2KHR3 1735 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TMEM120BA0PK00 339 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 SOCS7O14512 581 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TTC4O95801 387 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 SHBGP04278 402 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 COMTP21964 271 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 HOXD13P35453 343 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 STAT3P40763 770 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MSH2P43246 934 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 BPIFB4P59827 614 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 NCALDP61601 193 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 SATB1Q01826 763 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MYO1EQ12965 1108 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MESDQ14696 234 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 AOC3Q16853 763 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 ODR4Q5SWX8 454 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 LRCH2Q5VUJ6 765 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 C1orf186Q6ZWK4 172 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 ZNF365Q70YC5 407 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 KCTD1Q719H9 257 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms