RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 TRIM29Q14134 588 aa15.06■□□□□ 0
CHD3-209ENST00000473376 CTTNQ14247 550 aaKnown RBP15.06■□□□□ 0
CHD3-209ENST00000473376 ME3Q16798 604 aa15.06■□□□□ 0
CHD3-209ENST00000473376 EARS2Q5JPH6 523 aaKnown RBP15.06■□□□□ 0
CHD3-209ENST00000473376 ZBTB33Q86T24 672 aa15.06■□□□□ 0
CHD3-209ENST00000473376 COLGALT2Q8IYK4 626 aa15.06■□□□□ 0
CHD3-209ENST00000473376 TDRD5Q8NAT2 981 aaKnown RBP15.06■□□□□ 0
CHD3-209ENST00000473376 KREMEN2Q8NCW0 462 aa15.06■□□□□ 0
CHD3-209ENST00000473376 NSUN7Q8NE18 718 aaKnown RBP15.06■□□□□ 0
CHD3-209ENST00000473376 BCL7CQ8WUZ0 217 aaPredicted RBP15.06■□□□□ 0
CHD3-209ENST00000473376 KLHL5Q96PQ7 755 aa15.06■□□□□ 0
CHD3-209ENST00000473376 VN1R3Q9BXE9 311 aa15.06■□□□□ 0
CHD3-209ENST00000473376 GJB4Q9NTQ9 266 aa15.06■□□□□ 0
CHD3-209ENST00000473376 IPPQ9Y573 584 aa15.06■□□□□ 0
CHD3-209ENST00000473376 A0A1B0GUA9 196 aa15.05■□□□□ -0
CHD3-209ENST00000473376 ARL5CA6NH57 179 aa15.05■□□□□ -0
CHD3-209ENST00000473376 C2CD4DB7Z1M9 353 aa15.05■□□□□ -0
CHD3-209ENST00000473376 ADH1AP07327 375 aa15.05■□□□□ -0
CHD3-209ENST00000473376 KLRC2P26717 231 aa15.05■□□□□ -0
CHD3-209ENST00000473376 CYP4A11Q02928 519 aa15.05■□□□□ -0
CHD3-209ENST00000473376 MBTD1Q05BQ5 628 aa15.05■□□□□ -0
CHD3-209ENST00000473376 AMHR2Q16671 573 aa15.05■□□□□ -0
CHD3-209ENST00000473376 FAM187BQ17R55 369 aa15.05■□□□□ -0
CHD3-209ENST00000473376 PPP4R3CPQ6ZMV5 832 aa15.05■□□□□ -0
CHD3-209ENST00000473376 OTOP3Q7RTS5 596 aa15.05■□□□□ -0
CHD3-209ENST00000473376 MCPH1Q8NEM0 835 aa15.05■□□□□ -0
CHD3-209ENST00000473376 PRSS33Q8NF86 280 aa15.05■□□□□ -0
CHD3-209ENST00000473376 ACSF2Q96CM8 615 aaPredicted RBP15.05■□□□□ -0
CHD3-209ENST00000473376 RPS6KC1Q96S38 1066 aa15.05■□□□□ -0
CHD3-209ENST00000473376 HERC2P3Q9BVR0 1158 aa15.05■□□□□ -0
CHD3-209ENST00000473376 RXFP1Q9HBX9 757 aa15.05■□□□□ -0
CHD3-209ENST00000473376 TUFT1Q9NNX1 390 aa15.05■□□□□ -0
CHD3-209ENST00000473376 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.05■□□□□ -0
CHD3-209ENST00000473376 CHST7Q9NS84 486 aa15.05■□□□□ -0
CHD3-209ENST00000473376 DBR1Q9UK59 544 aaKnown RBP15.05■□□□□ -0
CHD3-209ENST00000473376 BTBD18B2RXH4 712 aa15.04■□□□□ -0
CHD3-209ENST00000473376 URODP06132 367 aa15.04■□□□□ -0
CHD3-209ENST00000473376 CNPP09543 421 aaKnown RBP15.04■□□□□ -0
CHD3-209ENST00000473376 EPCAMP16422 314 aa15.04■□□□□ -0
CHD3-209ENST00000473376 CREMQ03060 361 aa15.04■□□□□ -0
CHD3-209ENST00000473376 RARS2Q5T160 578 aaKnown RBP15.04■□□□□ -0
CHD3-209ENST00000473376 IER5LQ5T953 404 aa15.04■□□□□ -0
CHD3-209ENST00000473376 KIAA0319Q5VV43 1072 aa15.04■□□□□ -0
CHD3-209ENST00000473376 SLC27A1Q6PCB7 646 aa15.04■□□□□ -0
CHD3-209ENST00000473376 DIS3L2Q8IYB7 885 aaKnown RBP15.04■□□□□ -0
CHD3-209ENST00000473376 NXPE3Q969Y0 559 aa15.04■□□□□ -0
CHD3-209ENST00000473376 LLPHQ9BRT6 129 aaKnown RBP15.04■□□□□ -0
CHD3-209ENST00000473376 POLR3CQ9BUI4 534 aaPredicted RBP15.04■□□□□ -0
CHD3-209ENST00000473376 COLEC11Q9BWP8 271 aa15.04■□□□□ -0
CHD3-209ENST00000473376 APOL5Q9BWW9 433 aa15.04■□□□□ -0
CHD3-209ENST00000473376 GBP3Q9H0R5 595 aa15.04■□□□□ -0
CHD3-209ENST00000473376 PPP4R2Q9NY27 417 aa15.04■□□□□ -0
CHD3-209ENST00000473376 ZDBF2Q9HCK1 2354 aa15.04■□□□□ -0
CHD3-209ENST00000473376 INO80B-WBP1J3KQ70 363 aa15.03■□□□□ -0
CHD3-209ENST00000473376 ZBTB39O15060 712 aa15.03■□□□□ -0
CHD3-209ENST00000473376 B4GALT3O60512 393 aa15.03■□□□□ -0
CHD3-209ENST00000473376 POMCP01189 267 aa15.03■□□□□ -0
CHD3-209ENST00000473376 ARF4P18085 180 aaPredicted RBP15.03■□□□□ -0
CHD3-209ENST00000473376 GLRA2P23416 452 aa15.03■□□□□ -0
CHD3-209ENST00000473376 CA8P35219 290 aa15.03■□□□□ -0
CHD3-209ENST00000473376 CLCN5P51795 746 aa15.03■□□□□ -0
CHD3-209ENST00000473376 AFF1P51825 1210 aaKnown RBP15.03■□□□□ -0
CHD3-209ENST00000473376 DSG1Q02413 1049 aa15.03■□□□□ -0
CHD3-209ENST00000473376 TCF15Q12870 199 aa15.03■□□□□ -0
CHD3-209ENST00000473376 CAPSQ13938 189 aa15.03■□□□□ -0
CHD3-209ENST00000473376 SAFBQ15424 915 aaKnown RBP eCLIP15.03■□□□□ -0
CHD3-209ENST00000473376 LONRF3Q496Y0 759 aa15.03■□□□□ -0
CHD3-209ENST00000473376 CCDC149Q6ZUS6 474 aa15.03■□□□□ -0
CHD3-209ENST00000473376 AUTS2Q8WXX7 1259 aa15.03■□□□□ -0
CHD3-209ENST00000473376 CCDC43Q96MW1 224 aaKnown RBP15.03■□□□□ -0
CHD3-209ENST00000473376 NACC1Q96RE7 527 aa15.03■□□□□ -0
CHD3-209ENST00000473376 TRIM6Q9C030 488 aaPredicted RBP15.03■□□□□ -0
CHD3-209ENST00000473376 PLEKHA4Q9H4M7 779 aa15.03■□□□□ -0
CHD3-209ENST00000473376 TSHZ2Q9NRE2 1034 aa15.03■□□□□ -0
CHD3-209ENST00000473376 PRMT7Q9NVM4 692 aaPredicted RBP15.03■□□□□ -0
CHD3-209ENST00000473376 MARCH5Q9NX47 278 aa15.03■□□□□ -0
CHD3-209ENST00000473376 FNIP2Q9P278 1114 aa15.03■□□□□ -0
CHD3-209ENST00000473376 IGSF9Q9P2J2 1179 aa15.03■□□□□ -0
CHD3-209ENST00000473376 BRD1O95696 1058 aa15.02■□□□□ -0
CHD3-209ENST00000473376 SPATA31C1P0DKV0 1188 aa15.02■□□□□ -0
CHD3-209ENST00000473376 TXKP42681 527 aa15.02■□□□□ -0
CHD3-209ENST00000473376 GLUD2P49448 558 aa15.02■□□□□ -0
CHD3-209ENST00000473376 NEK4P51957 841 aa15.02■□□□□ -0
CHD3-209ENST00000473376 GRIK3Q13003 919 aa15.02■□□□□ -0
CHD3-209ENST00000473376 CDCA2Q69YH5 1023 aaPredicted RBP15.02■□□□□ -0
CHD3-209ENST00000473376 GSTCDQ8NEC7 633 aa15.02■□□□□ -0
CHD3-209ENST00000473376 ERMNQ8TAM6 284 aa15.02■□□□□ -0
CHD3-209ENST00000473376 STAMQ92783 540 aa15.02■□□□□ -0
CHD3-209ENST00000473376 GAD1Q99259 594 aa15.02■□□□□ -0
CHD3-209ENST00000473376 EIF2AQ9BY44 585 aaKnown RBP15.02■□□□□ -0
CHD3-209ENST00000473376 C2orf40Q9H1Z8 148 aa15.02■□□□□ -0
CHD3-209ENST00000473376 FZD8Q9H461 694 aa15.02■□□□□ -0
CHD3-209ENST00000473376 STK24Q9Y6E0 443 aa15.02■□□□□ -0
CHD3-209ENST00000473376 WDFY4Q6ZS81 3184 aa15.02□□□□□ -0.01
CHD3-209ENST00000473376 FAM205CA6NFA0 338 aa15.01□□□□□ -0.01
CHD3-209ENST00000473376 PROB1E7EW31 1015 aa15.01□□□□□ -0.01
CHD3-209ENST00000473376 TEX28O15482 410 aa15.01□□□□□ -0.01
CHD3-209ENST00000473376 GALR2O43603 387 aaPredicted RBP15.01□□□□□ -0.01
CHD3-209ENST00000473376 GLUD1P00367 558 aa15.01□□□□□ -0.01
CHD3-209ENST00000473376 RPA1P27694 616 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms