RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	FAM187A	A6NFU0	413 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	MEN1	O00255	615 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	DNAJC8	O75937	253 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GLRX3	O76003	335 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	DDAH1	O94760	285 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	SNUPN	O95149	360 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	APBA3	O96018	575 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	SNRNP70	P08621	437 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	SNRPA1	P09661	255 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	LTA4H	P09960	611 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ACTN1	P12814	892 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HNRNPL	P14866	589 aa	Known RBP eCLIP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	POR	P16435	677 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	IL11	P20809	199 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CDH3	P22223	829 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	KEL	P23276	732 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ACSL1	P33121	698 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	EPS15	P42566	896 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GIPR	P48546	466 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ALDH3A2	P51648	485 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CLCN4	P51793	760 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	AFF3	P51826	1226 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PPP5C	P53041	499 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	IFI35	P80217	286 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	NRG1	Q02297	640 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TBC1D8B	Q0IIM8	1120 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GRB10	Q13322	594 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	MAPKAPK3	Q16644	382 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	INTS3	Q68E01	1043 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HHIPL2	Q6UWX4	724 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ZNF783	Q6ZMS7	281 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	SEPT14	Q6ZU15	432 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CMTR2	Q8IYT2	770 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	LINS1	Q8NG48	757 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PTP4A1	Q93096	173 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	KISS1R	Q969F8	398 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	FERMT2	Q96AC1	680 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TMIGD2	Q96BF3	282 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CABS1	Q96KC9	395 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	RHOV	Q96L33	236 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ACAP3	Q96P50	834 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	DDX50	Q9BQ39	737 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	C19orf43	Q9BQ61	176 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CORO1B	Q9BR76	489 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	RUSC1	Q9BVN2	902 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	SORBS1	Q9BX66	1292 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GBP3	Q9H0R5	595 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PDE11A	Q9HCR9	933 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CCDC177	Q9NQR7	707 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HAUS2	Q9NVX0	235 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ZDHHC3	Q9NYG2	299 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	KIAA1257	Q9ULG3	409 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	LRFN2	Q9ULH4	789 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TTC41P	Q6P2S7	1318 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	LRRC14B	A6NHZ5	514 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HNRNPCL2	B2RXH8	293 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	IKBKB	O14920	756 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	KPNA5	O15131	536 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ATXN7	O15265	892 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HDAC3	O15379	428 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ZW10	O43264	779 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	AP1G1	O43747	822 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PCDHGA12	O60330	932 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TSPAN1	O60635	241 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TSPAN3	O60637	253 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HNRNPCL1	O60812	293 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PQBP1	O60828	265 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	KERA	O60938	352 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ERAL1	O75616	437 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	HEXB	P07686	556 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CDK4	P11802	303 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	COL6A2	P12110	1019 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ZNF3	P17036	446 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TNFSF4	P23510	183 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TLX1	P31314	330 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GBP2	P32456	591 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PSMC4	P43686	418 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	VPS41	P49754	854 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CCT8	P50990	548 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GPC3	P51654	580 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TUBA1B	P68363	451 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	EXOSC9	Q06265	439 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	FRG1	Q14331	258 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	NFE2L1	Q14494	772 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ARL13B	Q3SXY8	428 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	DCAF17	Q5H9S7	520 aa	Predicted RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	C1orf141	Q5JVX7	400 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	COX20	Q5RI15	118 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	DIEXF	Q68CQ4	756 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PM20D1	Q6GTS8	502 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	GGT6	Q6P531	493 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	ZCCHC12	Q6PEW1	402 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	C11orf88	Q6PI97	169 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	TUBA1A	Q71U36	451 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	MARK2	Q7KZI7	788 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	NLRC3	Q7RTR2	1065 aa		3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	PTRH1	Q86Y79	214 aa	Known RBP	3.52	□□□□□ -1.85
TTC3-214	ENST00000472398	CPO	Q8IVL8	374 aa		3.52	□□□□□ -1.85

Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms