RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 DMP1Q13316 513 aaPredicted RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 PRPF4BQ13523 1007 aaKnown RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 BECN1Q14457 450 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 KARSQ15046 597 aaKnown RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 STK38Q15208 465 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 TIGD5Q53EQ6 642 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 NOMO2Q5JPE7 1267 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 SLC27A1Q6PCB7 646 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 AGMOQ6ZNB7 445 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 HACE1Q8IYU2 909 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 DAW1Q8N136 415 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 KRI1Q8N9T8 703 aaKnown RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 COLGALT1Q8NBJ5 622 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 LINC00301Q8NCQ3 95 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 LPPQ93052 612 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 EPSTI1Q96J88 318 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 TRIM6Q9C030 488 aaPredicted RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 CCDC113Q9H0I3 377 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 ALG13Q9NP73 1137 aaKnown RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 KANSL3Q9P2N6 904 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 TFIP11Q9UBB9 837 aaKnown RBP14.38□□□□□ -0.11
COL28A1-206ENST00000465339 PLXNA4Q9HCM2 1894 aa14.38□□□□□ -0.11
COL28A1-206ENST00000465339 N4BP3O15049 544 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SPTLC2O15270 562 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 PPP6R2O75170 966 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 ITGB1P05556 798 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 PRKCBP05771 671 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 PLCG1P19174 1290 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 PPM1AP35813 382 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 NPTX2P47972 431 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SMTNP53814 917 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 MAPK7Q13164 816 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SKIV2LQ15477 1246 aaKnown RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 LONRF3Q496Y0 759 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SPECC1Q5M775 1068 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 FOXD4L5Q5VV16 416 aaPredicted RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 KCNT2Q6UVM3 1135 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SMG8Q8ND04 991 aaKnown RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SPPL3Q8TCT6 385 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 URGCPQ8TCY9 931 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 FOXD4L4Q8WXT5 416 aaPredicted RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 RAD54LQ92698 747 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 SYMPKQ92797 1274 aaKnown RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 ZNF558Q96NG5 402 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 CLIC6Q96NY7 704 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 EIF2AQ9BY44 585 aaKnown RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 TMEM134Q9H6X4 195 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 RSAD1Q9HA92 442 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 KMT5AQ9NQR1 393 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 BLOC1S4Q9NUP1 217 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.37□□□□□ -0.11
COL28A1-206ENST00000465339 COG5Q9UP83 839 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 IPPQ9Y573 584 aa14.37□□□□□ -0.11
COL28A1-206ENST00000465339 MYO7AQ13402 2215 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 MEIS3P2A8K0S8 358 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 SFI1A8K8P3 1242 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 FGF18O76093 207 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 YEATS4O95619 227 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 PLS3P13797 630 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 ALDH7A1P49419 539 aaKnown RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 KRT17Q04695 432 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 RNASELQ05823 741 aaKnown RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 ARSHQ5FYA8 562 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 RRAGBQ5VZM2 374 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 USP49Q70CQ1 688 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 APBB1IPQ7Z5R6 666 aaPredicted RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 THNSL1Q8IYQ7 743 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 SPIRE2Q8WWL2 714 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 LARP4BQ92615 738 aaKnown RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 NSUN3Q9H649 340 aaKnown RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 SPG21Q9NZD8 308 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 LARSQ9P2J5 1176 aaKnown RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 STK17AQ9UEE5 414 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 PUF60Q9UHX1 559 aaKnown RBP14.36□□□□□ -0.11
COL28A1-206ENST00000465339 CFAP45Q9UL16 551 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 ODF2LQ9ULJ1 636 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 LZTS1Q9Y250 596 aa14.36□□□□□ -0.11
COL28A1-206ENST00000465339 TDRD15B5MCY1 1934 aaKnown RBP14.35□□□□□ -0.11
COL28A1-206ENST00000465339 INPPL1O15357 1258 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 NCK2O43639 380 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 NPTXRO95502 500 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 LIG1P18858 919 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 SCP2P22307 547 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 PLCB3Q01970 1234 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 RAD51AP2Q09MP3 1159 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 DHX8Q14562 1220 aaKnown RBP14.35□□□□□ -0.11
COL28A1-206ENST00000465339 MCM6Q14566 821 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 PDE12Q6L8Q7 609 aaKnown RBP14.35□□□□□ -0.11
COL28A1-206ENST00000465339 CCDC73Q6ZRK6 1079 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 GPBP1Q86WP2 473 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 POF1BQ8WVV4 589 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 ATXN2LQ8WWM7 1075 aaKnown RBP14.35□□□□□ -0.11
COL28A1-206ENST00000465339 HLA-CQ95604 372 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 ADPGKQ9BRR6 497 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 KIFC3Q9BVG8 833 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 TMEM121BQ9BXQ6 578 aaPredicted RBP14.35□□□□□ -0.11
COL28A1-206ENST00000465339 TBC1D13Q9NVG8 400 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 ARHGAP28Q9P2N2 729 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 THEGQ9P2T0 379 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms