RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 NSUN6Q8TEA1 469 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 ING5Q8WYH8 240 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 OSBP2Q969R2 916 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 MCRS1Q96EZ8 462 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 DYNLL2Q96FJ2 89 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 SPACA7Q96KW9 195 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PRIMPOLQ96LW4 560 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 NEUROD6Q96NK8 337 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PNMA5Q96PV4 448 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 RPS6KC1Q96S38 1066 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 SEMA3CQ99985 751 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CELF4Q9BZC1 486 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 DPH1Q9BZG8 443 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CRNKL1Q9BZJ0 848 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 FAM49AQ9H0Q0 323 aaPredicted RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 SLC25A18Q9H1K4 315 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 MLXIPQ9HAP2 919 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CAPN10Q9HC96 672 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 TMEM74BQ9NUR3 256 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CUEDC1Q9NWM3 386 aaPredicted RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 TOR4AQ9NXH8 423 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 CLIP2Q9UDT6 1046 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PILRBQ9UKJ0 227 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 PNMA2Q9UL42 364 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 SYNPO2Q9UMS6 1093 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 MRPS23Q9Y3D9 190 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 SUPT16HQ9Y5B9 1047 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 WNT6Q9Y6F9 365 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ABCB11O95342 1321 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ATXN2Q99700 1313 aaKnown RBP3.07□□□□□ -1.92
USP40-211ENST00000464956 SIPA1L1O43166 1804 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 ACACAQ13085 2346 aa3.07□□□□□ -1.92
USP40-211ENST00000464956 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 MYBPHLA2RUH7 354 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 MBLAC1A4D2B0 266 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 COL6A6A6NMZ7 2263 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 SPECC1L-ADORA2AF8WAN1 911 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 FLRT2O43155 660 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 WIPF1O43516 503 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 TGM5O43548 720 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 SORBS3O60504 671 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 SYNCRIPO60506 623 aaKnown RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 RPS6KA5O75582 802 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 GJB3O75712 270 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 EIF3JO75822 258 aaKnown RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 IDH1O75874 414 aaKnown RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 NADKO95544 446 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 GGPS1O95749 300 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 DDAH2O95865 285 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 LRG1P02750 347 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 CDK4P11802 303 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 BCKDHBP21953 392 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 SLC1A4P43007 532 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 PTGER3P43115 390 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 RFX5P48382 616 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 SNAP25P60880 206 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 RELNP78509 3460 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 KRT76Q01546 638 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 CREMQ03060 361 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 GRSF1Q12849 480 aaKnown RBP eCLIP3.06□□□□□ -1.92
USP40-211ENST00000464956 TARDBPQ13148 414 aaKnown RBP eCLIP3.06□□□□□ -1.92
USP40-211ENST00000464956 NBR1Q14596 966 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 GRM4Q14833 912 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 SKIDA1Q1XH10 827 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 TWISTNBQ3B726 338 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 PPM1LQ5SGD2 360 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 PEAR1Q5VY43 1037 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 SLFN13Q68D06 897 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 PKN3Q6P5Z2 889 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 TMED8Q6PL24 325 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 SPNS3Q6ZMD2 512 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 CCDC81Q6ZN84 652 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 C12orf40Q86WS4 652 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 PALB2Q86YC2 1186 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 ARID3BQ8IVW6 561 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 KRI1Q8N9T8 703 aaKnown RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 GMCL1P1Q8NEA9 526 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 TSTD1Q8NFU3 115 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 RHBDD1Q8TEB9 315 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 SHROOM3Q8TF72 1996 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 ACDQ96AP0 544 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 ZNF578Q96N58 590 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 IWS1Q96ST2 819 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 MDFIQ99750 246 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 TTPALQ9BTX7 342 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 AMNQ9BXJ7 453 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 ZDHHC5Q9C0B5 715 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 DONSONQ9NYP3 566 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 MYH2Q9UKX2 1941 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 CIZ1Q9ULV3 898 aaPredicted RBP3.06□□□□□ -1.92
USP40-211ENST00000464956 ST3GAL5Q9UNP4 418 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 GINS2Q9Y248 185 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 WDFY3Q8IZQ1 3526 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 AKAP13Q12802 2813 aa3.06□□□□□ -1.92
USP40-211ENST00000464956 MIA3Q5JRA6 1907 aa3.05□□□□□ -1.92
USP40-211ENST00000464956 DENND4AQ7Z401 1863 aa3.05□□□□□ -1.92
USP40-211ENST00000464956 TSC2P49815 1807 aa3.05□□□□□ -1.92
USP40-211ENST00000464956 UBE4BO95155 1302 aa3.05□□□□□ -1.92
USP40-211ENST00000464956 KDM3AQ9Y4C1 1321 aa3.05□□□□□ -1.92
USP40-211ENST00000464956 POLQO75417 2590 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms