RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 HECAQ9UBI9 543 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 MTUS1Q9ULD2 1270 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 DYRK1BQ9Y463 629 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 COL18A1P39060 1754 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TRAV20A0A0B4J274 112 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 DCDC2CA8MYV0 355 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 M0R2C6 588 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NEMP1O14524 444 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 FYB1O15117 783 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 POLR3GO15318 223 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 PRODHO43272 600 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 COBLO75128 1261 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ADAMTS4O75173 837 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TADA3O75528 432 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 MAP3K6O95382 1288 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ITGAVP06756 1048 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 GSTP1P09211 210 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 RAG1P15918 1043 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 GCKP35557 465 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NEK3P51956 506 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 LIMK1P53667 647 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NRLP54845 237 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 DPYSQ14117 519 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ABCB5Q2M3G0 1257 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 GBP6Q6ZN66 633 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 BRAPQ7Z569 592 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ARHGAP22Q7Z5H3 698 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NLRP14Q86W24 1093 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 RTKN2Q8IZC4 609 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 CARNMT1Q8N4J0 409 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NAT8LQ8N9F0 302 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 LRRN4CLQ8ND94 238 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 C7orf57Q8NEG2 295 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 CCDC148Q8NFR7 591 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NLGN2Q8NFZ4 835 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ZNF606Q8WXB4 792 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 FNBP1Q96RU3 617 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 THUMPD2Q9BTF0 503 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 MRPL9Q9BYD2 267 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 GLT8D2Q9H1C3 349 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ZCCHC17Q9NP64 241 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 LUC7LQ9NQ29 371 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 HELLSQ9NRZ9 838 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TOR4AQ9NXH8 423 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM53CQ9NYF3 392 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 CEP72Q9P209 647 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 EPS15L1Q9UBC2 864 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TUBGCP4Q9UGJ1 667 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ZNF214Q9UL59 606 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 SOX13Q9UN79 622 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TRIM33Q9UPN9 1127 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 PCDHGC4Q9Y5F7 938 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC12A7Q9Y666 1083 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NFAT5O94916 1531 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 AATKQ6ZMQ8 1374 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SYNDIG1LA6NDD5 238 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 TTC34A8MYJ7 566 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 PDLIM1O00151 329 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 NDUFAB1O14561 156 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 ABLIM1O14639 778 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 MGEA5O60502 916 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GHRHP01286 108 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 JMJD7P0C870 316 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CPB1P15086 417 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GRK2P25098 689 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SCNN1BP51168 640 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 PSMD7P51665 324 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 MRPL12P52815 198 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CDK17Q00537 523 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 AKAP17AQ02040 695 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 FAPQ12884 760 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SEMA3AQ14563 771 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 METTL24Q5JXM2 366 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM102BQ5T8I3 360 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 NUGGCQ68CJ6 796 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CREB3L3Q68CJ9 461 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 NXNQ6DKJ4 435 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 MRPL14Q6P1L8 145 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 C1orf122Q6ZSJ8 110 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 RNF168Q8IYW5 571 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 MAGEB6Q8N7X4 407 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CCDC150Q8NCX0 1101 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GIMAP5Q96F15 307 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 WDR89Q96FK6 387 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 MAML3Q96JK9 1138 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 AARSD1Q9BTE6 412 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 KATNAL1Q9BW62 490 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 IL1RAPL1Q9NZN1 696 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 AIPL1Q9NZN9 384 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SUSD2Q9UGT4 822 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 TRAF3IP3Q9Y228 551 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 TMX2Q9Y320 296 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 NSD3Q9BZ95 1437 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 ADCY9O60503 1353 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SPDYE3A6NKU9 549 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 C9IYK1 514 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 AGRPO00253 132 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GDF9O60383 454 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 EPN2O95208 641 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms