RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 GBP3Q9H0R5 595 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 CDY2AQ9Y6F7 541 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 PHLPP2Q6ZVD8 1323 aa12.04□□□□□ -0.48
SCN9A-205ENST00000454569 GOLGA8IPA6NC78 632 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 GOLGA8JA6NMD2 632 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 TRIM66O15016 1216 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 AKAP3O75969 853 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 CD4P01730 458 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 THPOP40225 353 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 PPP1R2P41236 205 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 CYP2J2P51589 502 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 MRPS6P82932 125 aaKnown RBP12.03□□□□□ -0.48
SCN9A-205ENST00000454569 LRRC63Q05C16 580 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 PTPN11Q06124 597 aaPredicted RBP12.03□□□□□ -0.48
SCN9A-205ENST00000454569 POU5F1BQ06416 359 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 ADAM9Q13443 819 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 ALCAMQ13740 583 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 TFDP1Q14186 410 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 SNX17Q15036 470 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 SEZ6Q53EL9 994 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 ZBTB41Q5SVQ8 909 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 ZNF618Q5T7W0 954 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 HVCN1Q96D96 273 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 ACO2Q99798 780 aaKnown RBP12.03□□□□□ -0.48
SCN9A-205ENST00000454569 NFKBIZQ9BYH8 718 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 CELF4Q9BZC1 486 aaKnown RBP12.03□□□□□ -0.48
SCN9A-205ENST00000454569 NOC2LQ9Y3T9 749 aaKnown RBP12.03□□□□□ -0.48
SCN9A-205ENST00000454569 UMODL1Q5DID0 1318 aa12.03□□□□□ -0.48
SCN9A-205ENST00000454569 BICDL2A1A5D9 508 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 GOLGA6L19H0YKK7 550 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 ACKR2O00590 384 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 TSPAN1O60635 241 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 PIGRP01833 764 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 DARSP14868 501 aaKnown RBP12.02□□□□□ -0.49
SCN9A-205ENST00000454569 ARF4P18085 180 aaPredicted RBP12.02□□□□□ -0.49
SCN9A-205ENST00000454569 NR2F2P24468 414 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 HOXA11P31270 313 aaPredicted RBP12.02□□□□□ -0.49
SCN9A-205ENST00000454569 PHKA2P46019 1235 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 EFNA5P52803 228 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 WNT7BP56706 349 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 PTK7Q13308 1070 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 MBTPS1Q14703 1052 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 MAPK6Q16659 721 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 EDRF1Q3B7T1 1238 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 TAF2Q6P1X5 1199 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 STXBP4Q6ZWJ1 553 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 ZNF410Q86VK4 478 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 CREBRFQ8IUR6 639 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 ZBTB8OSQ8IWT0 167 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 NME8Q8N427 588 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 RDH13Q8NBN7 331 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 PLEKHO2Q8TD55 490 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 SAAL1Q96ER3 474 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 SCLT1Q96NL6 688 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 NAP1L5Q96NT1 182 aaPredicted RBP12.02□□□□□ -0.49
SCN9A-205ENST00000454569 TMEM206Q9H813 350 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 AGO3Q9H9G7 860 aaKnown RBP12.02□□□□□ -0.49
SCN9A-205ENST00000454569 PTPRHQ9HD43 1115 aa12.02□□□□□ -0.49
SCN9A-205ENST00000454569 HNRNPDLO14979 420 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CALUO43852 315 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 PQBP1O60828 265 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 KIF20AO95235 890 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 ADRB2P07550 413 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CKBP12277 381 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 EIF4BP23588 611 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CRYBB1P53674 252 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FKBP3Q00688 224 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 STRN3Q13033 797 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 GPNMBQ14956 572 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TPD52L1Q16890 204 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FAM187BQ17R55 369 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 LRRC26Q2I0M4 334 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 UVSSAQ2YD98 709 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TRIM60Q495X7 471 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CRELD2Q6UXH1 353 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 SRGAP1Q7Z6B7 1085 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 ZBTB33Q86T24 672 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 RPAINQ86UA6 219 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FAM228AQ86W67 206 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CEP120Q8N960 986 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 SLC17A8Q8NDX2 589 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 BICD1Q96G01 975 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 BORCS6Q96GS4 357 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FAM84AQ96KN4 292 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CNOT6LQ96LI5 555 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TSG101Q99816 390 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 C2orf40Q9H1Z8 148 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 THAP9Q9H5L6 903 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 INTS13Q9NVM9 706 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 HSPBP1Q9NZL4 362 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TRPV2Q9Y5S1 764 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 STYXL1Q9Y6J8 313 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 PDCD11Q14690 1871 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TANC1Q9C0D5 1861 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 KCNJ18B7U540 433 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 H0YCG3 227 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 MEFVO15553 781 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FAM189A1O60320 539 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 PROZP22891 400 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TNFSF9P41273 254 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms