RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 NOL7Q9UMY1 257 aaKnown RBP8.65□□□□□ -1.02
CD44-211ENST00000442151 LIMCH1Q9UPQ0 1083 aa8.65□□□□□ -1.02
CD44-211ENST00000442151 USP15Q9Y4E8 981 aaPredicted RBP8.65□□□□□ -1.02
CD44-211ENST00000442151 LOXHD1Q8IVV2 1947 aa8.65□□□□□ -1.02
CD44-211ENST00000442151 EML1O00423 815 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 PER2O15055 1255 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 LINC01565O15544 149 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 OFD1O75665 1012 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 CTSAP10619 480 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 NCLP19338 710 aaKnown RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 TXKP42681 527 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 RBM25P49756 843 aaKnown RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 DLX2Q07687 328 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 DSG2Q14126 1118 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 CBX2Q14781 532 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 EMC2Q15006 297 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 CLLU1OSQ5K130 101 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 LRRC55Q6ZSA7 311 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ADGRD2Q7Z7M1 963 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ZBTB8OSQ8IWT0 167 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 SUGP1Q8IWZ8 645 aaKnown RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 DIS3L2Q8IYB7 885 aaKnown RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 VPS52Q8N1B4 723 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 RNF149Q8NC42 400 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 HAS1Q92839 578 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 IGSF21Q96ID5 467 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ZNF668Q96K58 619 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 NFKBIZQ9BYH8 718 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ADAM7Q9H2U9 754 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 TTC12Q9H892 705 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 RSAD1Q9HA92 442 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 SH2B1Q9NRF2 756 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 RNF19AQ9NV58 838 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 IRAK3Q9Y616 596 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 PHLPP2Q6ZVD8 1323 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 FNDC1Q4ZHG4 1894 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 ZC3H11AO75152 810 aaKnown RBP eCLIP8.64□□□□□ -1.03
CD44-211ENST00000442151 SLITRK3O94933 977 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 GALTP07902 379 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 FGFR4P22455 802 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 GTF2F1P35269 517 aaKnown RBP eCLIP8.64□□□□□ -1.03
CD44-211ENST00000442151 TRAPPC10P48553 1259 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 NPEPPSP55786 919 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 PTENP60484 403 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 CREMQ03060 361 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 PPP2R5AQ15172 486 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ME3Q16798 604 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 PLA2G4FQ68DD2 849 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ZBTB33Q86T24 672 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 GPR65Q8IYL9 337 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 UBALD2Q8IYN6 164 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 SUSD6Q92537 303 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 TMEM143Q96AN5 459 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 C8orf76Q96K31 380 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 RPGRIP1Q96KN7 1286 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 CSRNP2Q9H175 543 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 FOXP1Q9H334 677 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 IFT122Q9HBG6 1241 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 MRPL17Q9NRX2 175 aaKnown RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 BARX2Q9UMQ3 279 aaPredicted RBP8.64□□□□□ -1.03
CD44-211ENST00000442151 INPP5FQ9Y2H2 1132 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 GIT1Q9Y2X7 761 aa8.64□□□□□ -1.03
CD44-211ENST00000442151 ZMYM2Q9UBW7 1377 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 C2orf71A6NGG8 1288 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 BTBD18B2RXH4 712 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 INO80B-WBP1J3KQ70 363 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 CTDNEP1O95476 244 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 DRP2Q13474 957 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 CTTNQ14247 550 aaKnown RBP8.63□□□□□ -1.03
CD44-211ENST00000442151 PKDCCQ504Y2 493 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 HAUS3Q68CZ6 603 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 NECAB1Q8N987 351 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 NSUN7Q8NE18 718 aaKnown RBP8.63□□□□□ -1.03
CD44-211ENST00000442151 HDAC7Q8WUI4 952 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 GJA10Q969M2 543 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 ACSF2Q96CM8 615 aaPredicted RBP8.63□□□□□ -1.03
CD44-211ENST00000442151 PRIMPOLQ96LW4 560 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 HSD17B14Q9BPX1 270 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 POLR3CQ9BUI4 534 aaPredicted RBP8.63□□□□□ -1.03
CD44-211ENST00000442151 NRDE2Q9H7Z3 1164 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 TBC1D13Q9NVG8 400 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 PRMT7Q9NVM4 692 aaPredicted RBP8.63□□□□□ -1.03
CD44-211ENST00000442151 RGL1Q9NZL6 768 aa8.63□□□□□ -1.03
CD44-211ENST00000442151 DBR1Q9UK59 544 aaKnown RBP8.63□□□□□ -1.03
CD44-211ENST00000442151 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.62□□□□□ -1.03
CD44-211ENST00000442151 CLASP2O75122 1294 aaKnown RBP8.62□□□□□ -1.03
CD44-211ENST00000442151 GLP2RO95838 553 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 KLRC2P26717 231 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 ZXDAP98168 799 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 CYP4A11Q02928 519 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 SIGLEC14Q08ET2 396 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 TMEM132AQ24JP5 1023 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 KIAA1841Q6NSI8 718 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 LLGL2Q6P1M3 1020 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 TRIM67Q6ZTA4 783 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 CABP7Q86V35 215 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 KSR1Q8IVT5 923 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 KCTD17Q8N5Z5 321 aa8.62□□□□□ -1.03
CD44-211ENST00000442151 PBXIP1Q96AQ6 731 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms