RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SRPRBQ9Y5M8 271 aaKnown RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 TTC28Q96AY4 2481 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 PHLPP2Q6ZVD8 1323 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 MYH11P35749 1972 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 SPTBN5Q9NRC6 3674 aaKnown RBP16.75■□□□□ 0.27
LIMS3-201ENST00000437679 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.75■□□□□ 0.27
LIMS3-201ENST00000437679 K7ERI5 159 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 IRS1P35568 1242 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 NPTX2P47972 431 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 PDE12Q6L8Q7 609 aaKnown RBP16.75■□□□□ 0.27
LIMS3-201ENST00000437679 DAW1Q8N136 415 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 SLC39A11Q8N1S5 342 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 TMEM169Q96HH4 297 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 USP28Q96RU2 1077 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 ADPGKQ9BRR6 497 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 RNF39Q9H2S5 420 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 KMT5AQ9NQR1 393 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 GIT1Q9Y2X7 761 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 HES2Q9Y543 173 aa16.75■□□□□ 0.27
LIMS3-201ENST00000437679 NCOR1O75376 2440 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 NT5C1B-RDH14C9J2C7 533 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 POMCP01189 267 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 KCNA5P22460 613 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 TXLNAP40222 546 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 KCNQ1P51787 676 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 RAD51AP2Q09MP3 1159 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 HYAL1Q12794 435 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 MAPK7Q13164 816 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 KARSQ15046 597 aaKnown RBP16.74■□□□□ 0.27
LIMS3-201ENST00000437679 ZNF396Q96N95 335 aaPredicted RBP16.74■□□□□ 0.27
LIMS3-201ENST00000437679 GAD1Q99259 594 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 CCSER1Q9C0I3 900 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 NXF3Q9H4D5 531 aaKnown RBP16.74■□□□□ 0.27
LIMS3-201ENST00000437679 PDZD7Q9H5P4 517 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 IGFLR1Q9H665 355 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 ENTPD7Q9NQZ7 604 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 CLDND1Q9NY35 253 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 DAXXQ9UER7 740 aaPredicted RBP16.74■□□□□ 0.27
LIMS3-201ENST00000437679 CCDC39Q9UFE4 941 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 FBXO2Q9UK22 296 aaPredicted RBP16.74■□□□□ 0.27
LIMS3-201ENST00000437679 RBM19Q9Y4C8 960 aaKnown RBP16.74■□□□□ 0.27
LIMS3-201ENST00000437679 VCANP13611 3396 aa16.74■□□□□ 0.27
LIMS3-201ENST00000437679 ARL5CA6NH57 179 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 TTLL13PA6NNM8 815 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 SFI1A8K8P3 1242 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 GALTP07902 379 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 PLCG1P19174 1290 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 MLH1P40692 756 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 SMTNP53814 917 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 ERVFC1P60507 584 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 DHX8Q14562 1220 aaKnown RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 BMS1Q14692 1282 aaKnown RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 COL19A1Q14993 1142 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 SLC39A14Q15043 492 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 STK38Q15208 465 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 SPECC1Q5M775 1068 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 FOXD4L5Q5VV16 416 aaPredicted RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 APBB1IPQ7Z5R6 666 aaPredicted RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 ZNF280BQ86YH2 543 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 SPRYD3Q8NCJ5 442 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 FOXD4L4Q8WXT5 416 aaPredicted RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 RAD54LQ92698 747 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 EPSTI1Q96J88 318 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 TCF25Q9BQ70 676 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 TMEM175Q9BSA9 504 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 TMEM134Q9H6X4 195 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 TLE6Q9H808 572 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 NGRNQ9NPE2 291 aaKnown RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 DNAJB4Q9UDY4 337 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 PARP2Q9UGN5 583 aa16.73■□□□□ 0.27
LIMS3-201ENST00000437679 MORC2Q9Y6X9 1032 aaPredicted RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 TCF20Q9UGU0 1960 aaKnown RBP16.73■□□□□ 0.27
LIMS3-201ENST00000437679 FSCN2O14926 492 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 INPPL1O15357 1258 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 DDHD2O94830 711 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 ALDH2P05091 517 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 BMP1P13497 986 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 PLS3P13797 630 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 AKAP5P24588 427 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 NRIP1P48552 1158 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 SLC11A1P49279 550 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 AFF1P51825 1210 aaKnown RBP16.72■□□□□ 0.27
LIMS3-201ENST00000437679 DCAF4L1Q3SXM0 396 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 LEXMQ3ZCV2 418 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 ATF7IP2Q5U623 682 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 PLPP4Q5VZY2 271 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 TMC7Q7Z402 723 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 ADGRD2Q7Z7M1 963 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 RBM23Q86U06 439 aaKnown RBP16.72■□□□□ 0.27
LIMS3-201ENST00000437679 GPBP1Q86WP2 473 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 KRI1Q8N9T8 703 aaKnown RBP16.72■□□□□ 0.27
LIMS3-201ENST00000437679 SPIRE2Q8WWL2 714 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 IGSF21Q96ID5 467 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 CLIC6Q96NY7 704 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 MRPL4Q9BYD3 311 aaKnown RBP16.72■□□□□ 0.27
LIMS3-201ENST00000437679 BLOC1S4Q9NUP1 217 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 ARHGAP28Q9P2N2 729 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 USP20Q9Y2K6 914 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 FAN1Q9Y2M0 1017 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 PCDHGC5Q9Y5F6 944 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms