RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 DENND3A2RUS2 1198 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 ZBBXA8MT70 800 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 K7ERI5 159 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 PIGRP01833 764 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 ATP2A2P16615 1042 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 SCP2P22307 547 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 PROZP22891 400 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 HOXD13P35453 343 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 SARSP49591 514 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 SMTNP53814 917 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 ASIC1P78348 528 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 HTRA4P83105 476 aaPredicted RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 ZC2HC1CQ53FD0 456 aaPredicted RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 HERC4Q5GLZ8 1057 aaPredicted RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 MRPL10Q7Z7H8 261 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 ECHDC2Q86YB7 292 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 HERC6Q8IVU3 1022 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 PDCD7Q8N8D1 485 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 CNNM3Q8NE01 707 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 HPS3Q969F9 1004 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 MARVELD3Q96A59 401 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 CCDC51Q96ER9 411 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 CPB2Q96IY4 423 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 SLC9A7Q96T83 725 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 ACO2Q99798 780 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 EIF2AQ9BY44 585 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 PDZD7Q9H5P4 517 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 C1orf112Q9NSG2 853 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 TBX20Q9UMR3 447 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 PIN4Q9Y237 131 aaKnown RBP13.67□□□□□ -0.22
USP40-205ENST00000430158 MYO7AQ13402 2215 aa13.67□□□□□ -0.22
USP40-205ENST00000430158 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 SOX1O00570 391 aaPredicted RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 ERLIN2O94905 339 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 GJB5O95377 273 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 AMHP03971 560 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 IDEP14735 1019 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 KCNA1Q09470 495 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 PRPF4BQ13523 1007 aaKnown RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 SLC39A4Q6P5W5 647 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 FAM178BQ8IXR5 827 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 CCDC65Q8IXS2 484 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 SMG8Q8ND04 991 aaKnown RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 ZNF689Q96CS4 500 aaPredicted RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 GBP4Q96PP9 640 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 TARS2Q9BW92 718 aaKnown RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 HAPLN2Q9GZV7 340 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 MTIF3Q9H2K0 278 aaKnown RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 IKZF4Q9H2S9 585 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 ELAC1Q9H777 363 aaKnown RBP13.66□□□□□ -0.22
USP40-205ENST00000430158 DACT1Q9NYF0 836 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 TBC1D7Q9P0N9 293 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 TNFSF13BQ9Y275 285 aa13.66□□□□□ -0.22
USP40-205ENST00000430158 CITO14578 2027 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.65□□□□□ -0.22
USP40-205ENST00000430158 MEIS3P2A8K0S8 358 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 H0YCG3 227 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 K7ENM7 598 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 DGKIO75912 1065 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 LINC00271P0C7V0 271 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 MYBP10242 640 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 ZSCAN20P17040 1043 aaPredicted RBP13.65□□□□□ -0.22
USP40-205ENST00000430158 KCNJ6P48051 423 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 PNOCQ13519 176 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 POSTNQ15063 836 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 KMT5BQ4FZB7 885 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 KANK3Q6NY19 840 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 NOTUMQ6P988 496 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 CDR2LQ86X02 465 aaPredicted RBP13.65□□□□□ -0.22
USP40-205ENST00000430158 NPAS4Q8IUM7 802 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 MAP4K3Q8IVH8 894 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 MYOCDQ8IZQ8 938 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 SLC17A8Q8NDX2 589 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 ZHX3Q9H4I2 956 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 FAM105AQ9NUU6 356 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 TMEM161AQ9NX61 479 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 YBX2Q9Y2T7 364 aaKnown RBP13.65□□□□□ -0.22
USP40-205ENST00000430158 PCDHB2Q9Y5E7 798 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 STYXL1Q9Y6J8 313 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 SZT2Q5T011 3432 aa13.65□□□□□ -0.22
USP40-205ENST00000430158 RHOBTB3O94955 611 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 ARHGEF15O94989 841 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 EOMESO95936 686 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 RPN1P04843 607 aaKnown RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 MYOGP15173 224 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 PBX2P40425 430 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 RABGGTBP53611 331 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 SMAD3P84022 425 aaKnown RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 STK4Q13043 487 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 HABP4Q5JVS0 413 aaKnown RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 CLLU1OSQ5K130 101 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 FAM26FQ5R3K3 315 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 ATF7IP2Q5U623 682 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 TWF2Q6IBS0 349 aaKnown RBP13.64□□□□□ -0.23
USP40-205ENST00000430158 SLC27A1Q6PCB7 646 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 ZPBP2Q6X784 338 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 AGMOQ6ZNB7 445 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 KIAA0895Q8NCT3 520 aa13.64□□□□□ -0.23
USP40-205ENST00000430158 ZNF507Q8TCN5 953 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms