RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LRRC43Q8N309 656 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 KCTD17Q8N5Z5 321 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 XAGE3Q8WTP9 111 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 CA5BP1Q8WTZ4 195 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 WDR11Q9BZH6 1224 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC38A10Q9HBR0 1119 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ATG3Q9NT62 314 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 RNF146Q9NTX7 359 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 WNT16Q9UBV4 365 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 EXOC6BQ9Y2D4 811 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PCDHGA5Q9Y5G8 931 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FPGT-TNNI3KV9GXZ4 949 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SYNGAP1Q96PV0 1343 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PASKQ96RG2 1323 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 RIC1Q4ADV7 1423 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 WNK2Q9Y3S1 2297 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 RASSF9O75901 435 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 C4BPAP04003 597 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PDIA3P30101 505 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SSTR2P30874 369 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TIE1P35590 1138 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ELK3P41970 407 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TOB1P50616 345 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FOLH1Q04609 750 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TLE1Q04724 770 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FYB2Q5VWT5 728 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PNPLA1Q8N8W4 532 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 DBF4BQ8NFT6 615 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FAM84BQ96KN1 310 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 HS6ST2Q96MM7 605 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TTC25Q96NG3 672 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TOX2Q96NM4 488 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ACAP3Q96P50 834 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 GCOM2Q9BZD3 368 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 RXFP1Q9HBX9 757 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 YAE1D1Q9NRH1 226 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TEKT2Q9UIF3 430 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SRRM3A6NNA2 597 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CAPN5O15484 640 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PCDH8O95206 1070 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PLCB3Q01970 1234 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 IFT88Q13099 833 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TFDP1Q14186 410 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 RALBP1Q15311 655 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ANKRD20A8PQ5CZ79 823 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TAF2Q6P1X5 1199 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PAOXQ6QHF9 649 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TSSK4Q6SA08 328 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 OLFM4Q6UX06 510 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 XKR5Q6UX68 686 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC146Q8IYE0 955 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TPCN2Q8NHX9 752 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ASB11Q8WXH4 323 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ALPK1Q96QP1 1244 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 HAUS2Q9NVX0 235 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PISDQ9UG56 409 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 HERC5Q9UII4 1024 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PCDHGC5Q9Y5F6 944 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MTCH2Q9Y6C9 303 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CACNA1DQ01668 2161 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CPLX1O14810 134 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 DDHD2O94830 711 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PRB1P04280 392 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PAX3P23760 479 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CASRP41180 1078 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIM29Q14134 588 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 NEDD9Q14511 834 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 LONRF3Q496Y0 759 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 HSP90AB2PQ58FF8 381 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MFSD4BQ5TF39 518 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 SP5Q6BEB4 398 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CLEC9AQ6UXN8 241 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 DAAM2Q86T65 1068 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CDH24Q86UP0 819 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 FBXO39Q8N4B4 442 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 NUP88Q99567 741 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 OSMRQ99650 979 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 C1QTNF7Q9BXJ2 289 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC8Q9H0W5 538 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 TRPV6Q9H1D0 765 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ANLNQ9NQW6 1124 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CDC42EP3Q9UKI2 254 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MRPL11Q9Y3B7 192 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 UBN2Q6ZU65 1347 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 IGSF9BQ9UPX0 1349 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 INO80B-WBP1J3KQ70 363 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 LINC01387J3KSC0 135 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 RGS20O76081 388 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 DDAH2O95865 285 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 GH2P01242 217 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 KLK3P07288 261 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 ATF7P17544 494 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 PTPREP23469 700 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 CCNE1P24864 410 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 USP11P51784 963 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 EXOSC9Q06265 439 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 MUM1L1Q5H9M0 696 aa3.01□□□□□ -1.93
CCDC88A-205ENST00000426576 FOXR2Q6PJQ5 311 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms