RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 GNPATO15228 680 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 LRPAP1P30533 357 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RELAQ04206 551 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ASPHQ12797 758 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 AIFM3Q96NN9 605 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PPP1R16BQ96T49 567 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NHEJ1Q9H9Q4 299 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ZMAT5Q9UDW3 170 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TSKSQ9UJT2 592 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NLRP1Q9C000 1473 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 IDH3BO43837 385 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MX2P20592 715 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 C1orf131Q8NDD1 294 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GLG1Q92896 1179 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PPP2R3CQ969Q6 453 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SLC26A6Q9BXS9 759 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MTRF1LQ9UGC7 380 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KIAA1210Q9ULL0 1709 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 A8MU76 341 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 VDRP11473 427 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 IL9RQ01113 521 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TOMM20Q15388 145 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 DSTYKQ6XUX3 929 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RGS9BPQ6ZS82 235 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FOXO6A8MYZ6 492 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RRM1P23921 792 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 COPB2P35606 906 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SLC34A1Q06495 639 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TMTC3Q6ZXV5 915 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MRPL39Q9NYK5 338 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 DENND4BO75064 1496 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ADGRF5Q8IZF2 1346 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TNFRSF10AO00220 468 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CNOT3O75175 753 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CDK4P11802 303 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MYLK3Q32MK0 819 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CDC26Q8NHZ8 85 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZFYVE19Q96K21 471 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 GLI2P10070 1586 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 FXR1P51114 621 aaKnown RBP eCLIP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TTLL12Q14166 644 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF268Q14587 947 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NSL1Q96IY1 281 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ARHGEF40Q8TER5 1519 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TRIM75PA6NK02 468 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF18P17022 549 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF362Q5T0B9 420 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 RHPN1Q8TCX5 695 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SNX12Q9UMY4 172 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HECW2Q9P2P5 1572 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 LAMC2Q13753 1193 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PON2Q15165 354 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TMEM67Q5HYA8 995 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MAML1Q92585 1016 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF184Q99676 751 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 BEGAINQ9BUH8 593 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZFP69BQ9UJL9 534 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PNMA6EA0A0J9YXQ4 647 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A9O60656 530 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TATP17735 454 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A6P19224 532 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A1P22309 533 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A4P22310 534 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A3P35503 534 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A5P35504 534 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ARL13BQ3SXY8 428 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SDE2Q6IQ49 451 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 LRRC74BQ6ZQY2 392 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MYLK2Q9H1R3 596 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SIAEQ9HAT2 523 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A7Q9HAW7 530 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A10Q9HAW8 530 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 UGT1A8Q9HAW9 530 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZW10O43264 779 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 USP1O94782 785 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 OR6B1O95007 311 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 STT3AP46977 705 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TFAP4Q01664 338 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 BYSLQ13895 437 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SPIDRQ14159 915 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PKN1Q16512 942 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 MCF2L2Q86YR7 1114 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ADSSL1Q8N142 457 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TRIM51Q9BSJ1 452 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PARVBQ9HBI1 364 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PTPRTO14522 1441 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 BTBD11A6QL63 1104 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 EIF3BP55884 814 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 HERVK_113P62684 666 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TRIP10Q15642 601 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 RFWD2Q8NHY2 731 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 VPS35Q96QK1 796 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ECSITQ9BQ95 431 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 YEATS2Q9ULM3 1422 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZBTB43O43298 467 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DGKIO75912 1065 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 RPL5P46777 297 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NR1I3Q14994 352 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 SPERTQ8NA61 448 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DAPK2Q9UIK4 370 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms