RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 LNPEPQ9UIQ6 1025 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 HDAC9Q9UKV0 1011 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 SCN7AQ01118 1682 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 IGSF9BQ9UPX0 1349 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 ANKRD63C9JTQ0 380 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 CYTH3O43739 400 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 SCNN1BP51168 640 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 DYNLL1P63167 89 aaKnown RBP8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 GRM4Q14833 912 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 SPATA16Q9BXB7 569 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 GALNT8Q9NY28 637 aa8.6□□□□□ -1.03
HMGXB4-202ENST00000418170 TCEA3O75764 348 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 CBX6O95503 412 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 IL9RQ01113 521 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 EDRF1Q3B7T1 1238 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 TMEM119Q4V9L6 283 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 ZC2HC1CQ53FD0 456 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 C1QTNF12Q5T7M4 302 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 NELFCDQ8IXH7 590 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 SYCP3Q8IZU3 236 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 PNMA1Q8ND90 353 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 LNX1Q8TBB1 728 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 NR1H4Q96RI1 486 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 DHX36Q9H2U1 1008 aaKnown RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 METTL14Q9HCE5 456 aaKnown RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 PREBQ9HCU5 417 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 AAASQ9NRG9 546 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 ABCF2Q9UG63 623 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 LGALS13Q9UHV8 139 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 MAD2L2Q9UI95 211 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 AJAP1Q9UKB5 411 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 BLOC1S6Q9UL45 172 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 TSPY2A6NKD2 308 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 CETN3O15182 167 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 HNRNPCL1O60812 293 aaKnown RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 SLC34A1Q06495 639 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 RASIP1Q5U651 963 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 ZDHHC14Q8IZN3 488 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 MIPOL1Q8TD10 442 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 CTNNBL1Q8WYA6 563 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 SPZ1Q9BXG8 430 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 MMADHCQ9H3L0 296 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 CCDC87Q9NVE4 849 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 TMOD4Q9NZQ9 345 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 PCDHA2Q9Y5H9 948 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 ACTL7BQ9Y614 415 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 PASKQ96RG2 1323 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 ERVV-2B6SEH9 535 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 LGR5O75473 907 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 GGPS1O95749 300 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 AP1B1Q10567 949 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 CYP1B1Q16678 543 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 AADACL2Q6P093 401 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 RFWD3Q6PCD5 774 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 PPP4R3CPQ6ZMV5 832 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 NUDT12Q9BQG2 462 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 SIX2Q9NPC8 291 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 LARSQ9P2J5 1176 aaKnown RBP8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 PHTF1Q9UMS5 762 aa8.59□□□□□ -1.03
HMGXB4-202ENST00000418170 TULP1O00294 542 aaPredicted RBP8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 LMNB1P20700 586 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 TPP2P29144 1249 aaPredicted RBP8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 WDR4P57081 412 aaKnown RBP8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 CDR2Q01850 454 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 CALCOCO2Q13137 446 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 LSAMPQ13449 338 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 CALCRLQ16602 461 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 TMEM266Q2M3C6 531 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 ACBD5Q5T8D3 534 aaPredicted RBP8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 FRMD5Q7Z6J6 570 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 CYP4X1Q8N118 509 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 TBCKQ8TEA7 893 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 SNX29Q8TEQ0 813 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 SCFD1Q8WVM8 642 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 ZNF184Q99676 751 aaPredicted RBP8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 MIPEPQ99797 713 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 GMEB1Q9Y692 573 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 COMMD3-BMI1R4GMX3 469 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 KIAA1551Q9HCM1 1747 aa8.59□□□□□ -1.04
HMGXB4-202ENST00000418170 PCDH11YQ9BZA8 1340 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 POTEMA6NI47 508 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 CAPN9O14815 690 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 TP73O15350 636 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 TTC4O95801 387 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 CYP1A1P04798 512 aaPredicted RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 IGHMBP2P38935 993 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 EPHA7Q15375 998 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 DSTYKQ6XUX3 929 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 RGS9BPQ6ZS82 235 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 DGKHQ86XP1 1220 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 SRRM1Q8IYB3 904 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 PPFIBP2Q8ND30 876 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 RBM17Q96I25 401 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 RAB34Q9BZG1 259 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 SAR1AQ9NR31 198 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 DDX43Q9NXZ2 648 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 TBC1D7Q9P0N9 293 aa8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 TRMT112Q9UI30 125 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 MIF4GDA9UHW6 222 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-202ENST00000418170 TBX10O75333 385 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms