RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 NPTXRO95502 500 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 ATF7P17544 494 aaPredicted RBP16.18■□□□□ 0.18
CHD1-202ENST00000414220 UBE3AQ05086 875 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 SKIV2LQ15477 1246 aaKnown RBP16.18■□□□□ 0.18
CHD1-202ENST00000414220 LONRF3Q496Y0 759 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 TIGD5Q53EQ6 642 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 CLLU1OSQ5K130 101 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 UBXN11Q5T124 520 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 ATF7IP2Q5U623 682 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 USP49Q70CQ1 688 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 SPATA32Q96LK8 384 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 REEP2Q9BRK0 252 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 TCHPQ9BT92 498 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 KIFC3Q9BVG8 833 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 PANK2Q9BZ23 570 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 CCDC113Q9H0I3 377 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 ARHGAP28Q9P2N2 729 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 PARP2Q9UGN5 583 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 RCOR1Q9UKL0 485 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 GIT1Q9Y2X7 761 aa16.18■□□□□ 0.18
CHD1-202ENST00000414220 TRAK2O60296 914 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 OFD1O75665 1012 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 MAPK7Q13164 816 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 CCDC85BQ15834 202 aaPredicted RBP16.17■□□□□ 0.18
CHD1-202ENST00000414220 ARSHQ5FYA8 562 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 SPRED2Q7Z698 418 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 FAM178BQ8IXR5 827 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 DAW1Q8N136 415 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 PDILTQ8N807 584 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 KLHL23Q8NBE8 558 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 COLGALT1Q8NBJ5 622 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 APOL6Q9BWW8 343 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 EIF2AQ9BY44 585 aaKnown RBP16.17■□□□□ 0.18
CHD1-202ENST00000414220 RNF19AQ9NV58 838 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 PLAGL2Q9UPG8 496 aa16.17■□□□□ 0.18
CHD1-202ENST00000414220 NPHP3-ACAD11A0A0J9YXS1 232 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 LPXNO60711 386 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 ALDH2P05091 517 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 GAP43P17677 238 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 ANP32AP39687 249 aaKnown RBP16.16■□□□□ 0.18
CHD1-202ENST00000414220 CACNB1Q02641 598 aaPredicted RBP16.16■□□□□ 0.18
CHD1-202ENST00000414220 GIT2Q14161 759 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 KCNT2Q6UVM3 1135 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 AGMOQ6ZNB7 445 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 SMG8Q8ND04 991 aaKnown RBP16.16■□□□□ 0.18
CHD1-202ENST00000414220 BICD1Q96G01 975 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 RPS6KC1Q96S38 1066 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 PDZD7Q9H5P4 517 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 CWH43Q9H720 699 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 MAGEF1Q9HAY2 307 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 SPG21Q9NZD8 308 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 STK39Q9UEW8 545 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 PCDHA7Q9UN72 937 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 TNFSF13BQ9Y275 285 aa16.16■□□□□ 0.18
CHD1-202ENST00000414220 ZMYM2Q9UBW7 1377 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 K7ENM7 598 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 NCK2O43639 380 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 ZC3H11AO75152 810 aaKnown RBP eCLIP16.15■□□□□ 0.18
CHD1-202ENST00000414220 FGF18O76093 207 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 LINC00271P0C7V0 271 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 MATR3P43243 847 aaKnown RBP eCLIP16.15■□□□□ 0.18
CHD1-202ENST00000414220 ZNF131P52739 623 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 YARSP54577 528 aaKnown RBP16.15■□□□□ 0.18
CHD1-202ENST00000414220 NCKAP1LP55160 1127 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 PLCB3Q01970 1234 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 PDE12Q6L8Q7 609 aaKnown RBP16.15■□□□□ 0.18
CHD1-202ENST00000414220 DYMQ7RTS9 669 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 HAUS6Q7Z4H7 955 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 CDR2LQ86X02 465 aaPredicted RBP16.15■□□□□ 0.18
CHD1-202ENST00000414220 MICAL1Q8TDZ2 1067 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 DDX12PQ92771 950 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 TMEM169Q96HH4 297 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 TNMDQ9H2S6 317 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 NSUN3Q9H649 340 aaKnown RBP16.15■□□□□ 0.18
CHD1-202ENST00000414220 ALG13Q9NP73 1137 aaKnown RBP16.15■□□□□ 0.18
CHD1-202ENST00000414220 TBC1D13Q9NVG8 400 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 SEL1LQ9UBV2 794 aa16.15■□□□□ 0.18
CHD1-202ENST00000414220 SZT2Q5T011 3432 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 POMCP01189 267 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 MAPTP10636 758 aaKnown RBP16.14■□□□□ 0.17
CHD1-202ENST00000414220 IDEP14735 1019 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 AXDND1Q5T1B0 1012 aaPredicted RBP16.14■□□□□ 0.17
CHD1-202ENST00000414220 NT5DC1Q5TFE4 455 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 ADALQ6DHV7 355 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 ZPBP2Q6X784 338 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 LRRC55Q6ZSA7 311 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 CCDC65Q8IXS2 484 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 CEP57L1Q8IYX8 460 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 TMEM161BQ8NDZ6 487 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 SPPL3Q8TCT6 385 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 POF1BQ8WVV4 589 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 DHX58Q96C10 678 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 GAD1Q99259 594 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 ACO2Q99798 780 aaKnown RBP16.14■□□□□ 0.17
CHD1-202ENST00000414220 TMEM175Q9BSA9 504 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 CCDC94Q9BW85 323 aaPredicted RBP16.14■□□□□ 0.17
CHD1-202ENST00000414220 GBP3Q9H0R5 595 aa16.14■□□□□ 0.17
CHD1-202ENST00000414220 NXF3Q9H4D5 531 aaKnown RBP16.14■□□□□ 0.17
CHD1-202ENST00000414220 TOPORSQ9NS56 1045 aaPredicted RBP16.14■□□□□ 0.17
CHD1-202ENST00000414220 LZTS1Q9Y250 596 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms