RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 MRPL43Q8N983 215 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 KRI1Q8N9T8 703 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 MICAL1Q8TDZ2 1067 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 HDAC7Q8WUI4 952 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 HVCN1Q96D96 273 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 DDX27Q96GQ7 796 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 UROC1Q96N76 676 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 POP1Q99575 1024 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 MRPL4Q9BYD3 311 aaKnown RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 ST6GALNAC4Q9H4F1 302 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 TLE6Q9H808 572 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 UBE2ZQ9H832 354 aaPredicted RBP7.04□□□□□ -1.28
USP54-202ENST00000413442 MINDY3Q9H8M7 445 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 MAGEF1Q9HAY2 307 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 KMT5AQ9NQR1 393 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP54-202ENST00000413442 SLC38A7Q9NVC3 462 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 ARHGAP28Q9P2N2 729 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 MTUS1Q9ULD2 1270 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 MTMR6Q9Y217 621 aa7.04□□□□□ -1.28
USP54-202ENST00000413442 CHD9Q3L8U1 2897 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ARL5CA6NH57 179 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 EPOPA6NHQ4 379 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 CCDC169A6NNP5 214 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 E9PMD0 336 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 DLL1O00548 723 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 FSCN2O14926 492 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 GRM6O15303 877 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 XPOTO43592 962 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 TRAPPC3O43617 180 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 CUTAO60888 179 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 DTNBO60941 627 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 CSDE1O75534 798 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 TOM1L1O75674 476 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PRKCBP05771 671 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 THP07101 528 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 GALTP07902 379 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PLA2G4BP0C869 781 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ZSCAN22P10073 491 aaPredicted RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 CTSAP10619 480 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 MCF2P10911 925 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 FGFR1P11362 822 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ATF7P17544 494 aaPredicted RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 GAP43P17677 238 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 NPTX2P47972 431 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ZNF131P52739 623 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 YARSP54577 528 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 SLC12A3P55017 1021 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PEX3P56589 373 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 GRIK3Q13003 919 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 RESTQ13127 1097 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 POSTNQ15063 836 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 TPRNQ4KMQ1 711 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 TMEM119Q4V9L6 283 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PAN2Q504Q3 1202 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 CLLU1OSQ5K130 101 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 RRAGBQ5VZM2 374 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 AGMOQ6ZNB7 445 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 LRRC55Q6ZSA7 311 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 STXBP4Q6ZWJ1 553 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 SV2BQ7L1I2 683 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 TMC7Q7Z402 723 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 TMEM87AQ8NBN3 555 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 RNF169Q8NCN4 708 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 LINC00301Q8NCQ3 95 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 SMG8Q8ND04 991 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 RASSF8Q8NHQ8 419 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 HELQQ8TDG4 1101 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 KCNG4Q8TDN1 519 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ASAP3Q8TDY4 903 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 GDPD5Q8WTR4 605 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PPM1EQ8WY54 764 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 LARP4BQ92615 738 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 IGSF21Q96ID5 467 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PNMA5Q96PV4 448 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PPP1R16BQ96T49 567 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 CCDC94Q9BW85 323 aaPredicted RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 OXCT2Q9BYC2 517 aaPredicted RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 RHOBTB2Q9BYZ6 727 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 CCDC113Q9H0I3 377 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 NRDE2Q9H7Z3 1164 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 PLEKHA5Q9HAU0 1116 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ALG13Q9NP73 1137 aaKnown RBP7.03□□□□□ -1.28
USP54-202ENST00000413442 RNF19AQ9NV58 838 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 TBC1D13Q9NVG8 400 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 IPPQ9Y573 584 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 KIAA1671Q9BY89 1806 aa7.03□□□□□ -1.28
USP54-202ENST00000413442 ARHGEF37A1IGU5 675 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 NRP1O14786 923 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 KIAA0391O15091 583 aaKnown RBP7.02□□□□□ -1.29
USP54-202ENST00000413442 SPTLC2O15270 562 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 CLDN3O15551 220 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 TRAK2O60296 914 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 HIP1RO75146 1068 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 CXCL14O95715 111 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 LDHAP00338 332 aaKnown RBP7.02□□□□□ -1.29
USP54-202ENST00000413442 PIGRP01833 764 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 MYL1P05976 194 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 FGFR4P22455 802 aa7.02□□□□□ -1.29
USP54-202ENST00000413442 RPL9P32969 192 aaKnown RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms