RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ZFP42Q96MM3 310 aa21.08■□□□□ 0.97
SF3A1-202ENST00000411423 GAD1Q99259 594 aa21.08■□□□□ 0.97
SF3A1-202ENST00000411423 CXCL16Q9H2A7 254 aa21.08■□□□□ 0.97
SF3A1-202ENST00000411423 PDZD7Q9H5P4 517 aa21.08■□□□□ 0.97
SF3A1-202ENST00000411423 DNM3Q9UQ16 869 aa21.08■□□□□ 0.97
SF3A1-202ENST00000411423 STK24Q9Y6E0 443 aa21.08■□□□□ 0.97
SF3A1-202ENST00000411423 K7ELQ4 463 aaPredicted RBP21.07■□□□□ 0.96
SF3A1-202ENST00000411423 INPPL1O15357 1258 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 HIP1RO75146 1068 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 AKAP5P24588 427 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 KCNC3Q14003 757 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 SF3A1Q15459 793 aaKnown RBP21.07■□□□□ 0.96
SF3A1-202ENST00000411423 TMEM119Q4V9L6 283 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 EEF1DP3Q658K8 133 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 ARL6IP4Q66PJ3 421 aaKnown RBP21.07■□□□□ 0.96
SF3A1-202ENST00000411423 SLC27A1Q6PCB7 646 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 BRAPQ7Z569 592 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 ZBTB8OSQ8IWT0 167 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 IGSF21Q96ID5 467 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 TLE6Q9H808 572 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 PRMT7Q9NVM4 692 aaPredicted RBP21.07■□□□□ 0.96
SF3A1-202ENST00000411423 BARX2Q9UMQ3 279 aaPredicted RBP21.07■□□□□ 0.96
SF3A1-202ENST00000411423 CLIC4Q9Y696 253 aa21.07■□□□□ 0.96
SF3A1-202ENST00000411423 ARL5CA6NH57 179 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 F8W810 466 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 NCK2O43639 380 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 PRKCBP05771 671 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 LIG1P18858 919 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 ALDH7A1P49419 539 aaKnown RBP21.06■□□□□ 0.96
SF3A1-202ENST00000411423 SCNN1GP51170 649 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 RNASELQ05823 741 aaKnown RBP21.06■□□□□ 0.96
SF3A1-202ENST00000411423 TAS1R3Q7RTX0 852 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 FAM178BQ8IXR5 827 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 CNNM3Q8NE01 707 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 DEPTORQ8TB45 409 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 AUTS2Q8WXX7 1259 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 INTS4Q96HW7 963 aaKnown RBP21.06■□□□□ 0.96
SF3A1-202ENST00000411423 PRIMPOLQ96LW4 560 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 ENTPD7Q9NQZ7 604 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 KLK14Q9P0G3 267 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 MTMR6Q9Y217 621 aa21.06■□□□□ 0.96
SF3A1-202ENST00000411423 MBTPS2O43462 519 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 NDUFV1P49821 464 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 KRT17Q04695 432 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 PTPAQ15257 358 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 NT5DC1Q5TFE4 455 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 TMC7Q7Z402 723 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 CABP7Q86V35 215 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 COLGALT2Q8IYK4 626 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 URGCPQ8TCY9 931 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 RSPH1Q8WYR4 309 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 KIFAP3Q92845 792 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 ZBP1Q9H171 429 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 C2orf40Q9H1Z8 148 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 MARCH5Q9NX47 278 aa21.05■□□□□ 0.96
SF3A1-202ENST00000411423 PUF60Q9UHX1 559 aaKnown RBP21.05■□□□□ 0.96
SF3A1-202ENST00000411423 NPHP3-ACAD11A0A0J9YXS1 232 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 C2orf71A6NGG8 1288 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 SFI1A8K8P3 1242 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 ACKR2O00590 384 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 NRP1O14786 923 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 NPTX2P47972 431 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 SLC12A3P55017 1021 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 PEX3P56589 373 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 DSC1Q08554 894 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 NCBP1Q09161 790 aaKnown RBP21.04■□□□□ 0.96
SF3A1-202ENST00000411423 RAD51AP2Q09MP3 1159 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 PRPF4BQ13523 1007 aaKnown RBP21.04■□□□□ 0.96
SF3A1-202ENST00000411423 MAPK6Q16659 721 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 PDE12Q6L8Q7 609 aaKnown RBP21.04■□□□□ 0.96
SF3A1-202ENST00000411423 VPS52Q8N1B4 723 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 SYT2Q8N9I0 419 aaPredicted RBP21.04■□□□□ 0.96
SF3A1-202ENST00000411423 TMEM169Q96HH4 297 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 CACNG4Q9UBN1 327 aa21.04■□□□□ 0.96
SF3A1-202ENST00000411423 PPP2R5AQ15172 486 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 ARSHQ5FYA8 562 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 USP49Q70CQ1 688 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 DDX53Q86TM3 631 aaKnown RBP21.03■□□□□ 0.96
SF3A1-202ENST00000411423 MRPL43Q8N983 215 aaKnown RBP21.03■□□□□ 0.96
SF3A1-202ENST00000411423 PPP2R3CQ969Q6 453 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 SNX21Q969T3 373 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 IFT74Q96LB3 600 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 TRIM6Q9C030 488 aaPredicted RBP21.03■□□□□ 0.96
SF3A1-202ENST00000411423 NGRNQ9NPE2 291 aaKnown RBP21.03■□□□□ 0.96
SF3A1-202ENST00000411423 UBN1Q9NPG3 1134 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 BLOC1S4Q9NUP1 217 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 CD207Q9UJ71 328 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 GIT1Q9Y2X7 761 aa21.03■□□□□ 0.96
SF3A1-202ENST00000411423 EFEMP2O95967 443 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 PLA2G4BP0C869 781 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 PDCP20941 246 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 GUCY2CP25092 1073 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 CACNB1Q02641 598 aaPredicted RBP21.02■□□□□ 0.96
SF3A1-202ENST00000411423 SMC1AQ14683 1233 aaKnown RBP21.02■□□□□ 0.96
SF3A1-202ENST00000411423 PUS10Q3MIT2 529 aaKnown RBP21.02■□□□□ 0.96
SF3A1-202ENST00000411423 LLGL2Q6P1M3 1020 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 TAS1R1Q7RTX1 841 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 TMEM175Q9BSA9 504 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 SNTG2Q9NY99 539 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 ARHGAP28Q9P2N2 729 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms