RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 CUTAO60888 179 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 NPTXRO95502 500 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 ITGB1P05556 798 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 SMTNP53814 917 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 CACNB1Q02641 598 aaPredicted RBP22.86■■□□□ 1.25
VSX1-204ENST00000409958 TMEM132AQ24JP5 1023 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 CDR2LQ86X02 465 aaPredicted RBP22.86■■□□□ 1.25
VSX1-204ENST00000409958 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.86■■□□□ 1.25
VSX1-204ENST00000409958 REEP2Q9BRK0 252 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 PDZD7Q9H5P4 517 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 PRDM6Q9NQX0 595 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 LARSQ9P2J5 1176 aaKnown RBP22.86■■□□□ 1.25
VSX1-204ENST00000409958 INPP5FQ9Y2H2 1132 aa22.86■■□□□ 1.25
VSX1-204ENST00000409958 MYH11P35749 1972 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 EDN1P05305 212 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 GIT2Q14161 759 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 KCNT2Q6UVM3 1135 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 SPPL3Q8TCT6 385 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 URGCPQ8TCY9 931 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 ZNF558Q96NG5 402 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 RNF39Q9H2S5 420 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 NXF3Q9H4D5 531 aaKnown RBP22.85■■□□□ 1.25
VSX1-204ENST00000409958 ALG13Q9NP73 1137 aaKnown RBP22.85■■□□□ 1.25
VSX1-204ENST00000409958 TBC1D13Q9NVG8 400 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 HES2Q9Y543 173 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 PRUNE2Q8WUY3 3088 aa22.85■■□□□ 1.25
VSX1-204ENST00000409958 MYO7AQ13402 2215 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 INPPL1O15357 1258 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 SLC16A4O15374 487 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 KRT18P05783 430 aaKnown RBP22.84■■□□□ 1.25
VSX1-204ENST00000409958 STAT6P42226 847 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 ZNF131P52739 623 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 TIGD5Q53EQ6 642 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 AXDND1Q5T1B0 1012 aaPredicted RBP22.84■■□□□ 1.25
VSX1-204ENST00000409958 NT5DC1Q5TFE4 455 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 TAS1R3Q7RTX0 852 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 THNSL1Q8IYQ7 743 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 ADPGKQ9BRR6 497 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 KANSL3Q9P2N6 904 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 RCOR1Q9UKL0 485 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 USP20Q9Y2K6 914 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 GIT1Q9Y2X7 761 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 ATP6V1DQ9Y5K8 247 aa22.84■■□□□ 1.25
VSX1-204ENST00000409958 A0A087X0B3 334 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 CARNS1A5YM72 827 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 H0YCG3 227 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 FAM13AO94988 1023 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 PPM1AP35813 382 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 UBE3AQ05086 875 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 ATF7IP2Q5U623 682 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 SV2BQ7L1I2 683 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 TMEM161BQ8NDZ6 487 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 KCNN1Q92952 543 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 PARVGQ9HBI0 331 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 UNC80Q8N2C7 3258 aa22.83■■□□□ 1.25
VSX1-204ENST00000409958 TBCAO75347 108 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 FGF18O76093 207 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 ME1P48163 572 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 NCKAP1LP55160 1127 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 PLCB3Q01970 1234 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 RNASELQ05823 741 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 DCAF4L1Q3SXM0 396 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 EEF1DP3Q658K8 133 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 SHC4Q6S5L8 630 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 MYCT1Q8N699 235 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 POF1BQ8WVV4 589 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 ACO2Q99798 780 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 APOL6Q9BWW8 343 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 MRPL4Q9BYD3 311 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 PANK2Q9BZ23 570 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 NRDE2Q9H7Z3 1164 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 PCDHA7Q9UN72 937 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 TNFSF13BQ9Y275 285 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 ZMYM2Q9UBW7 1377 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 ARL5CA6NH57 179 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 MAPTP10636 758 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 SCP2P22307 547 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 DNAJB1P25685 340 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 ALDH7A1P49419 539 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 AFF1P51825 1210 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 BCAR1P56945 870 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 KRT85P78386 507 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 STRN3Q13033 797 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 CAMK1Q14012 370 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 APBB1IPQ7Z5R6 666 aaPredicted RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 PDILTQ8N807 584 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 GAD1Q99259 594 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 NSUN3Q9H649 340 aaKnown RBP22.82■■□□□ 1.24
VSX1-204ENST00000409958 SPG21Q9NZD8 308 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 LZTS1Q9Y250 596 aa22.82■■□□□ 1.24
VSX1-204ENST00000409958 ZC3H11AO75152 810 aaKnown RBP eCLIP22.81■■□□□ 1.24
VSX1-204ENST00000409958 AKAP5P24588 427 aa22.81■■□□□ 1.24
VSX1-204ENST00000409958 PBX3P40426 434 aa22.81■■□□□ 1.24
VSX1-204ENST00000409958 MLH1P40692 756 aa22.81■■□□□ 1.24
VSX1-204ENST00000409958 SKIV2LQ15477 1246 aaKnown RBP22.81■■□□□ 1.24
VSX1-204ENST00000409958 SLC39A11Q8N1S5 342 aa22.81■■□□□ 1.24
VSX1-204ENST00000409958 DDX12PQ92771 950 aa22.81■■□□□ 1.24
VSX1-204ENST00000409958 TARS2Q9BW92 718 aaKnown RBP22.81■■□□□ 1.24
VSX1-204ENST00000409958 PTPRHQ9HD43 1115 aa22.81■■□□□ 1.24
VSX1-204ENST00000409958 MYMKA6NI61 221 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms