RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 THPOP40225 353 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 E2F4Q16254 413 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 C10orf76Q5T2E6 689 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 CENPPQ6IPU0 288 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 PDXDC1Q6P996 788 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 SND1Q7KZF4 910 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIG4-202ENST00000405925 IFT20Q8IY31 132 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 MYRIPQ8NFW9 859 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 FUCA2Q9BTY2 467 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 NGRNQ9NPE2 291 aaKnown RBP9.77□□□□□ -0.85
LIG4-202ENST00000405925 APEX2Q9UBZ4 518 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 FHOD1Q9Y613 1164 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 SNED1Q8TER0 1413 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 CYP3A7-CYP3A51PA0A087WV96 503 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 CYP26A1O43174 497 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 CYP3A7P24462 503 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 AP3M2P53677 418 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 TMEM132DQ14C87 1099 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 IL17AQ16552 155 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 CEP57Q86XR8 500 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 CCDC89Q8N998 374 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 RPGRIP1Q96KN7 1286 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 EDEM3Q9BZQ6 932 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 DBR1Q9UK59 544 aaKnown RBP9.76□□□□□ -0.85
LIG4-202ENST00000405925 TRIM17Q9Y577 477 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 A0A087WZ62 844 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 A8MXQ7 604 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 PPFIA4O75335 1185 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 STK10O94804 968 aaKnown RBP9.76□□□□□ -0.85
LIG4-202ENST00000405925 SSTR3P32745 418 aaPredicted RBP9.76□□□□□ -0.85
LIG4-202ENST00000405925 KLK7P49862 253 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 SPRYD7Q5W111 196 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 CYP4F22Q6NT55 531 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 PPP1R2P3Q6NXS1 205 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 REPS2Q8NFH8 660 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 URGCPQ8TCY9 931 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 FDXACB1Q9BRP7 624 aaPredicted RBP9.76□□□□□ -0.85
LIG4-202ENST00000405925 PORCNQ9H237 461 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 OLFML3Q9NRN5 406 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 FEZ2Q9UHY8 353 aaPredicted RBP9.76□□□□□ -0.85
LIG4-202ENST00000405925 NUP188Q5SRE5 1749 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 NKRFO15226 690 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIG4-202ENST00000405925 HLA-DRAP01903 254 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 SOX5P35711 763 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 HSD17B4P51659 736 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 KYAT1Q16773 422 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 ENOSF1Q7L5Y1 443 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 SCN4BQ8IWT1 228 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 ETNPPLQ8TBG4 499 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 ZNF560Q96MR9 790 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 OSMRQ99650 979 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 SENP7Q9BQF6 1050 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 PI4K2AQ9BTU6 479 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 BTBD7Q9P203 1132 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 TXNDC16Q9P2K2 825 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 ANAPC7Q9UJX3 599 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 USP20Q9Y2K6 914 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 ADGRG1Q9Y653 693 aa9.76□□□□□ -0.85
LIG4-202ENST00000405925 SPEF2Q9C093 1822 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 A6NJR5 290 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 TMEM88BA6NKF7 163 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 EXTL3O43909 919 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 NPTXRO95502 500 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 RFX1P22670 979 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 PMS1P54277 932 aaKnown RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 CLUL1Q15846 466 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 CDO1Q16878 200 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 NOTUMQ6P988 496 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 PLCD3Q8N3E9 789 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 TAB3Q8N5C8 712 aaPredicted RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 JRKLQ9Y4A0 524 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 H0YHG0 523 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 OGTO15294 1046 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 TOM1L1O75674 476 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 ATN1P54259 1190 aaPredicted RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 BEX3Q00994 111 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 GLRA4Q5JXX5 417 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 BSPRYQ5W0U4 402 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 MAP7D3Q8IWC1 876 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 GPR161Q8N6U8 529 aaKnown RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 PCSK9Q8NBP7 692 aaKnown RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 PPP1R13LQ8WUF5 828 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 CALN1Q9BXU9 219 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 ZNF148Q9UQR1 794 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 FRMPD4Q14CM0 1322 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 CNTNAP1P78357 1384 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 SLC15A5A6NIM6 579 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 M0QYV0 167 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 AKAP3O75969 853 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 UPP2O95045 317 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 TBC1D8O95759 1140 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 FTLP02792 175 aaPredicted RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 ELF1P32519 619 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 RBP5P82980 135 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 SP3Q02447 781 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 FAM110CQ1W6H9 321 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 KIAA1755Q5JYT7 1200 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 FAM117BQ6P1L5 589 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 RHOT2Q8IXI1 618 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 MICAL1Q8TDZ2 1067 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms