RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 CDCA2Q69YH5 1023 aaPredicted RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 INTS8Q75QN2 995 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 RNF180Q86T96 592 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 SLC9A9Q8IVB4 645 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 CCDC150Q8NCX0 1101 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 SLC35C1Q96A29 364 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 POP1Q99575 1024 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 MKNK1Q9BUB5 465 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 TMEM134Q9H6X4 195 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 IFT122Q9HBG6 1241 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.04□□□□□ -1.768e-8■■■■■ 43.4
RTN4-208ENST00000404909 AGO2Q9UKV8 859 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 A0A1W2PQC6 194 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 TTC26A0AVF1 554 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ESPNB1AK53 854 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 RNF225M0QZC1 329 aaPredicted RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 HAS3O00219 553 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 NRDCO43847 1150 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 MSCO60682 206 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 KPNA6O60684 536 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 CLSTN1O94985 981 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ADRB2P07550 413 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 KRT9P35527 623 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 GCLMP48507 274 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 GPC3P51654 580 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 VAMP7P51809 220 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 SNRPFP62306 86 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 MBTD1Q05BQ5 628 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 BFSP1Q12934 665 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 NFIL3Q16649 462 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ZBTB41Q5SVQ8 909 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ZSCAN30Q86W11 494 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 GPD1LQ8N335 351 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 C17orf53Q8N3J3 647 aaPredicted RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 PCSK9Q8NBP7 692 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 FAM212AQ96EL1 285 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 CPB2Q96IY4 423 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 FAM84AQ96KN4 292 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 OSMRQ99650 979 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 LSM14BQ9BX40 385 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 AGPAT5Q9NUQ2 364 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ZKSCAN5Q9Y2L8 839 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 LUC7L2Q9Y383 392 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 ZNF233A6NK53 670 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ACKR2O00590 384 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 EPHB6O15197 1021 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 TOM1L1O75674 476 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ERLIN2O94905 339 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ACTN1P12814 892 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 GARTP22102 1010 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 TBX2Q13207 712 aaPredicted RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 MYBPC2Q14324 1141 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 EXOC3L4Q17RC7 722 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 TSR1Q2NL82 804 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 ZNF568Q3ZCX4 644 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 SLC9C1Q4G0N8 1177 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ATF7IP2Q5U623 682 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 LMBRD2Q68DH5 695 aaPredicted RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 SLFN12LQ6IEE8 588 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 CACNA2D4Q7Z3S7 1137 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 C12orf56Q8IXR9 622 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 THNSL1Q8IYQ7 743 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 LINC01465Q8N7H1 131 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 TC2NQ8N9U0 490 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 NEK11Q8NG66 645 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 BORCS6Q96GS4 357 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ERGIC2Q96RQ1 377 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ACO2Q99798 780 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 HAPLN2Q9GZV7 340 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 CCDC113Q9H0I3 377 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 UPF3AQ9H1J1 476 aaKnown RBP4.04□□□□□ -1.76
RTN4-208ENST00000404909 CDHR5Q9HBB8 845 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 NLRC4Q9NPP4 1024 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 WBP1LQ9NX94 342 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 GCNT4Q9P109 453 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 PYCARDQ9ULZ3 195 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 NOD1Q9Y239 953 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 ITIH6Q6UXX5 1313 aa4.04□□□□□ -1.76
RTN4-208ENST00000404909 SMIM35A0A1B0GVV1 85 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 MBLAC1A4D2B0 266 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 EXTL3O43909 919 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 MFAP3LO75121 409 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CTSHP09668 335 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TNNI1P19237 187 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 SLC9A1P19634 815 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 SCP2P22307 547 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 FMO5P49326 533 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PRMT2P55345 433 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PPP2R3AQ06190 1150 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 KCNMA1Q12791 1236 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CBWD6Q4V339 395 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CBWD3Q5JTY5 395 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CBWD5Q5RIA9 395 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 GDF6Q6KF10 455 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 ZPBP2Q6X784 338 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 GBP6Q6ZN66 633 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CATSPER4Q7RTX7 472 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CNGA4Q8IV77 575 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 KLHDC9Q8NEP7 349 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PLEKHO2Q8TD55 490 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms