RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SLC24A5Q71RS6 500 aa7.71□□□□□ -1.17
LIMA1-202ENST00000394943 ECHDC2Q86YB7 292 aa7.71□□□□□ -1.17
LIMA1-202ENST00000394943 KMT5AQ9NQR1 393 aa7.71□□□□□ -1.17
LIMA1-202ENST00000394943 SLC16A3O15427 465 aaKnown RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 DGKIO75912 1065 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 PRKCBP05771 671 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 ERCC5P28715 1186 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 MAGEA10P43363 369 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 DSC1Q08554 894 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 FAM26FQ5R3K3 315 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 FOXD4L5Q5VV16 416 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 NOTUMQ6P988 496 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 C15orf39Q6ZRI6 1047 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 RHPN2Q8IUC4 686 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 FOXD4L4Q8WXT5 416 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 BADQ92934 168 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 UIMC1Q96RL1 719 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 MED15Q96RN5 788 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 KIAA1586Q9HCI6 787 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 TYW1Q9NV66 732 aaKnown RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 STK39Q9UEW8 545 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 PCDHA5Q9Y5H7 936 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 TET1Q8NFU7 2136 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 M0QZ92 97 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 SMC2O95347 1197 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 CYP2C18P33260 490 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 AARSP49588 968 aaKnown RBP eCLIP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 LRRC63Q05C16 580 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 STK4Q13043 487 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 COL19A1Q14993 1142 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 KNOP1Q1ED39 458 aaKnown RBP7.71□□□□□ -1.18
LIMA1-202ENST00000394943 FAM102BQ5T8I3 360 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 STXBP4Q6ZWJ1 553 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 C7orf61Q8IZ16 206 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 RNF149Q8NC42 400 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 GSTCDQ8NEC7 633 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 SPATA18Q8TC71 538 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 CASD1Q96PB1 797 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 TMEM175Q9BSA9 504 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 EXOC7Q9UPT5 735 aa7.71□□□□□ -1.18
LIMA1-202ENST00000394943 FAM13AO94988 1023 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 NLRP12P59046 1061 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PAK2Q13177 524 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 MAPK6Q16659 721 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PRPF38BQ5VTL8 546 aaKnown RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 TTI2Q6NXR4 508 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 LRRC55Q6ZSA7 311 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 MLKLQ8NB16 471 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 SNX27Q96L92 541 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 CEP63Q96MT8 703 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 SAMD11Q96NU1 681 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 IFIH1Q9BYX4 1025 aaKnown RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 VRTNQ9H8Y1 702 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 DENND4AQ7Z401 1863 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 TTLL13PA6NNM8 815 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 GOLGA6L22H0YM25 854 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 RPS6KA5O75582 802 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 KIF20AO95235 890 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 MYBP10242 640 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 LRPAP1P30533 357 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PEX3P56589 373 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 ZNF445P59923 1031 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 KSR1Q8IVT5 923 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PPP1R10Q96QC0 940 aaKnown RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 OSMRQ99650 979 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 CDT1Q9H211 546 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 RWDD2AQ9UIY3 292 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 AKT3Q9Y243 479 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PCDHA11Q9Y5I1 949 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PTPRDP23468 1912 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 TTC26A0AVF1 554 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 HOXA2O43364 376 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 TBCAO75347 108 aaKnown RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 CAPN15O75808 1086 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 CAVIN2O95810 425 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 LDHAP00338 332 aaKnown RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 ACTN1P12814 892 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 CSF2RAP15509 400 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 MLLT1Q03111 559 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 PNOCQ13519 176 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 KIZQ2M2Z5 673 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 APBB1IPQ7Z5R6 666 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 FAM178BQ8IXR5 827 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 TMC2Q8TDI7 906 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIMA1-202ENST00000394943 SEMA6BQ9H3T3 888 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 CWH43Q9H720 699 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 TMEM63CQ9P1W3 806 aa7.7□□□□□ -1.18
LIMA1-202ENST00000394943 DENND3A2RUS2 1198 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 KINO60870 393 aaKnown RBP7.69□□□□□ -1.18
LIMA1-202ENST00000394943 CD52P31358 61 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 GTF2H1P32780 548 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 ATN1P54259 1190 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-202ENST00000394943 IKBKEQ14164 716 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 ATF7IP2Q5U623 682 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 DEPTORQ8TB45 409 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 DUSP9Q99956 384 aaKnown RBP7.69□□□□□ -1.18
LIMA1-202ENST00000394943 AGPAT3Q9NRZ7 376 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 FAM105AQ9NUU6 356 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 VWA8A3KMH1 1905 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms