RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MOSPD2Q8NHP6 518 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 SAYSD1Q9NPB0 183 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 CEP72Q9P209 647 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 FAM187AA6NFU0 413 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 WDR64B1ANS9 1081 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 PAX7P23759 505 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 RBL2Q08999 1139 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 OCLNQ16625 522 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 RABL6Q3YEC7 729 aaPredicted RBP9.22□□□□□ -0.93
LIG3-202ENST00000378526 TIMM50Q3ZCQ8 353 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 ZNF618Q5T7W0 954 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 CCDC81Q6ZN84 652 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 CNOT6LQ96LI5 555 aaKnown RBP9.22□□□□□ -0.93
LIG3-202ENST00000378526 AVENQ9NQS1 362 aaPredicted RBP9.22□□□□□ -0.93
LIG3-202ENST00000378526 SLC12A6Q9UHW9 1150 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 SETD1BQ9UPS6 1966 aaKnown RBP9.22□□□□□ -0.93
LIG3-202ENST00000378526 ARHGDIBP52566 201 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 BTKQ06187 659 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 ASAP1Q9ULH1 1129 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 FAM92AA1XBS5 289 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 PFKFB1P16118 471 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 ATP12AP54707 1039 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 DLG1Q12959 904 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 KRT31Q15323 416 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 KYNUQ16719 465 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 ERICH5Q6P6B1 374 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 RHPN2Q8IUC4 686 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 RBM41Q96IZ5 413 aaKnown RBP9.22□□□□□ -0.93
LIG3-202ENST00000378526 TCEANC2Q96MN5 208 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 CARD14Q9BXL6 1004 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 CD248Q9HCU0 757 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 PANK4Q9NVE7 773 aa9.22□□□□□ -0.93
LIG3-202ENST00000378526 ZBED6P86452 979 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 MYL7Q01449 175 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 DMP1Q13316 513 aaPredicted RBP9.21□□□□□ -0.93
LIG3-202ENST00000378526 PEG10Q86TG7 708 aaKnown RBP9.21□□□□□ -0.93
LIG3-202ENST00000378526 ITFG2Q969R8 447 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 RNFT2Q96EX2 444 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 CDY2AQ9Y6F7 541 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 CDY1Q9Y6F8 540 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 IGF2BP3O00425 579 aaKnown RBP eCLIP9.21□□□□□ -0.93
LIG3-202ENST00000378526 FAM58BPP0C7Q3 252 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 CHRNA3P32297 505 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 CASP5P51878 434 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 BRDTQ58F21 947 aaPredicted RBP9.21□□□□□ -0.93
LIG3-202ENST00000378526 NDUFAF2Q8N183 169 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 WDR12Q9GZL7 423 aaKnown RBP9.21□□□□□ -0.93
LIG3-202ENST00000378526 MMADHCQ9H3L0 296 aaPredicted RBP9.21□□□□□ -0.93
LIG3-202ENST00000378526 HACD3Q9P035 362 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 QARSP47897 775 aaKnown RBP9.21□□□□□ -0.93
LIG3-202ENST00000378526 HSF2Q03933 536 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 DGKKQ5KSL6 1271 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 CNBD1Q8NA66 436 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 GINM1Q9NU53 330 aa9.21□□□□□ -0.93
LIG3-202ENST00000378526 A0A1W2PQ27 194 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 A0A1W2PQ64 194 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 A0A1W2PQD8 194 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 C5orf58C9J3I9 102 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 RAB15P59190 212 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 MAN2A1Q16706 1144 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 SLC9C2Q5TAH2 1124 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 ULK4Q96C45 1275 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 TRMT112Q9UI30 125 aaKnown RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 LRRC9Q6ZRR7 1453 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 STMND1H3BQB6 276 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 SEMA3EO15041 775 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 EXTL3O43909 919 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 AP1G2O75843 785 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 ALDH18A1P54886 795 aaKnown RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 VSTM4Q8IW00 320 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 KCTD17Q8N5Z5 321 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 PPP2R3CQ969Q6 453 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 S100PBPQ96BU1 408 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 DCTPP1Q9H773 170 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 CPSF3Q9UKF6 684 aaKnown RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 TMCO1Q9UM00 188 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 COMMD3-BMI1R4GMX3 469 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 MAP3K1Q13233 1512 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 H2AFYO75367 372 aaKnown RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 RFX8Q6ZV50 586 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 CCDC85AQ96PX6 553 aaPredicted RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 ACLYP53396 1101 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 TTLL12Q14166 644 aaPredicted RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 SHROOM1Q2M3G4 852 aaPredicted RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 ZNF544Q6NX49 715 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 MED10Q9BTT4 135 aa9.21□□□□□ -0.94
LIG3-202ENST00000378526 GPN3Q9UHW5 284 aaPredicted RBP9.21□□□□□ -0.94
LIG3-202ENST00000378526 SOS1Q07889 1333 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 MEI4A8MW99 385 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 LIN7AO14910 233 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 NQO1P15559 274 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 TRAF3Q13114 568 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TSNQ15631 228 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 KNOP1Q1ED39 458 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 USP39Q53GS9 565 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 ZNF280DQ6N043 979 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TRIM74Q86UV6 250 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TRIM73Q86UV7 250 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TM6SF1Q9BZW5 370 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 INSRP06213 1382 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms