RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 IPO13O94829 963 aaKnown RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 APOBEC3AP31941 199 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 CCT2P78371 535 aaKnown RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 ATP13A4Q4VNC1 1196 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 GPR158Q5T848 1215 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 LMBR1LQ6UX01 489 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 HTR3DQ70Z44 454 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 SLC41A1Q8IVJ1 513 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 FBXO18Q8NFZ0 1043 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 TEX101Q9BY14 249 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 PLAAQ9Y263 795 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 WDR33Q9C0J8 1336 aaKnown RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 GOLGA6L6A8MZA4 724 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 LEFTY2O00292 366 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 WNT10BO00744 389 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 ADCY6O43306 1168 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 LPXNO60711 386 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 DNAJC6O75061 913 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 RAB11FIP3O75154 756 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 GYS2P54840 703 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 INHBCP55103 352 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 LGALS4P56470 323 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 DUSP2Q05923 314 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 STRN3Q13033 797 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 KRTAP15-1Q3LI76 137 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 ZNF662Q6ZS27 426 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 HDGFL2Q7Z4V5 671 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 C11orf74Q86VG3 221 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 SYT12Q8IV01 421 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 AHI1Q8N157 1196 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 LILRA3Q8N6C8 439 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 AMER2Q8N7J2 671 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 CLRN3Q8NCR9 226 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 GPR150Q8NGU9 434 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 EAF2Q96CJ1 260 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 IL17RAQ96F46 866 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 KCTD10Q9H3F6 313 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 NOC2LQ9Y3T9 749 aaKnown RBP3.18□□□□□ -1.9
VPS13A-206ENST00000376646 DMRT1Q9Y5R6 373 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 NUMBLQ9Y6R0 609 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 LOC105371045A0A1W2PR82 267 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 AHRRA9YTQ3 701 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 MAFGO15525 162 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 XPAP23025 273 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 OCRLQ01968 901 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 MRPL49Q13405 166 aaKnown RBP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 MBNL2Q5VZF2 373 aaKnown RBP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 FRMD7Q6ZUT3 714 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 TAS1R1Q7RTX1 841 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 APBB1IPQ7Z5R6 666 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 RNF169Q8NCN4 708 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 OR52N2Q8NGI0 321 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 MDM1Q8TC05 714 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 TGFBRAP1Q8WUH2 860 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 SPON1Q9HCB6 807 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 VTA1Q9NP79 307 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 EIF2B4Q9UI10 523 aaKnown RBP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 TBX22Q9Y458 520 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 NRP1O14786 923 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 GZMKP49863 264 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 MRGPRGQ86SM5 289 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 RNF180Q86T96 592 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 GLB1L3Q8NCI6 653 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 REPS2Q8NFH8 660 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 HAS1Q92839 578 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 CEP95Q96GE4 821 aa3.17□□□□□ -1.9
VPS13A-206ENST00000376646 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.17□□□□□ -1.9
VPS13A-206ENST00000376646 RAMP2O60895 175 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 ITGA10O75578 1167 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 BPIP17213 487 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 CDK17Q00537 523 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 COL10A1Q03692 680 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 NAIF1Q69YI7 327 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-206ENST00000376646 LAIR1Q6GTX8 287 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 RASSF3Q86WH2 238 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 THNSL2Q86YJ6 484 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 GLB1L2Q8IW92 636 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 ULK2Q8IYT8 1036 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 OR14C36Q8NHC7 312 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 PROKR1Q8TCW9 393 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 USP7Q93009 1102 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 TRPM5Q9NZQ8 1165 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 DPP7Q9UHL4 492 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 HDAC5Q9UQL6 1122 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 CDY2AQ9Y6F7 541 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 ENPP3O14638 875 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 ZNF185O15231 689 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 NCR1O76036 304 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 CTSSP25774 331 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 PTGS2P35354 604 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 NRG3P56975 720 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 APBA1Q02410 837 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 VPS72Q15906 364 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 SMN1Q16637 294 aaKnown RBP3.16□□□□□ -1.9
VPS13A-206ENST00000376646 DCAF17Q5H9S7 520 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-206ENST00000376646 RHOUQ7L0Q8 258 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 FAM83AQ86UY5 434 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 FAM193BQ96PV7 902 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-206ENST00000376646 KCNH6Q9H252 994 aa3.16□□□□□ -1.9
VPS13A-206ENST00000376646 ANKFY1Q9P2R3 1169 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms