RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ZNF302Q9NR11 478 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 PSD3Q9NYI0 1048 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 PLA2G2EQ9NZK7 142 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 ARHGAP28Q9P2N2 729 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 WRAP73Q9P2S5 460 aaPredicted RBP9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 HCSTQ9UBK5 93 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 GABBR1Q9UBS5 961 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 PUF60Q9UHX1 559 aaKnown RBP9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 AGTPBP1Q9UPW5 1226 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 PCDHGA4Q9Y5G9 962 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 LOC285556D6RIA3 1793 aa9.44□□□□□ -0.9
SNRNP40-202ENST00000373720 NCANO14594 1321 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 ZNF541Q9H0D2 1346 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 KIF3CO14782 793 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CLIC2O15247 247 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 EXTL3O43909 919 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 EVI5O60447 810 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 RTN2O75298 545 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CCNE2O96020 404 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 OATP04181 439 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 TBXAS1P24557 533 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 AARSP49588 968 aaKnown RBP eCLIP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CASP4P49662 377 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CYP2J2P51589 502 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 POLGP54098 1239 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 PEX3P56589 373 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 UBXN2AP68543 259 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CCNA1P78396 465 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 IRX3P78415 501 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CUL1Q13616 776 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 DRAP1Q14919 205 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 FAM102BQ5T8I3 360 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 IER5Q5VY09 327 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 ALS2CLQ60I27 953 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 C11orf63Q6NUN7 778 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 METTL7BQ6UX53 244 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CCNI2Q6ZMN8 369 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 ZNF571Q7Z3V5 609 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 IL31RAQ8NI17 732 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 CCDC26Q8TAB7 109 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 LMO3Q8TAP4 145 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 PARD3BQ8TEW8 1205 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 MAIP1Q8WWC4 291 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 BBXQ8WY36 941 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 TSC1Q92574 1164 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 ZKSCAN4Q969J2 545 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 VCPIP1Q96JH7 1222 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 SYT11Q9BT88 431 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 TLR10Q9BXR5 811 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 SPATC1LQ9H0A9 340 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 PORCNQ9H237 461 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 SLITRK6Q9H5Y7 841 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 AZI2Q9H6S1 392 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 HOMER2Q9NSB8 354 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 STIM2Q9P246 746 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 UVRAGQ9P2Y5 699 aa9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 PPP1R1BQ9UD71 204 aaPredicted RBP9.43□□□□□ -0.9
SNRNP40-202ENST00000373720 GOLGA6L10A0A0M3HER8 536 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 DENND3A2RUS2 1198 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 RCCD1A6NED2 376 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 CCDC169A6NNP5 214 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 SFI1A8K8P3 1242 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 BACH1O14867 736 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 STRNO43815 780 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 ATP9AO75110 1047 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 STBD1O95210 358 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 MOCS3O95396 460 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 TBC1D8O95759 1140 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 EGFRP00533 1210 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 PLEKP08567 350 aaPredicted RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 ZSCAN20P17040 1043 aaPredicted RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 ALDH5A1P51649 535 aaPredicted RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 EPHB4P54760 987 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 GPC5P78333 572 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 KCTD2Q14681 263 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 SMC1AQ14683 1233 aaKnown RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 PSMD6Q15008 389 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 R3HDM1Q15032 1099 aaKnown RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 PCBP1Q15365 356 aaKnown RBP eCLIP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 WDR44Q5JSH3 913 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 SWSAP1Q6NVH7 229 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 PEX26Q7Z412 305 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 CROCCP2Q86T23 111 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 FAM71AQ8IYT1 594 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 RASGEF1CQ8N431 466 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 TTC39CQ8N584 583 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 UBL4BQ8N7F7 174 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 FAM71BQ8TC56 605 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 WHAMMQ8TF30 809 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 SHC3Q92529 594 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 NT5C1BQ96P26 610 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 MMS19Q96T76 1030 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 AGPAT1Q99943 283 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 NFKBIZQ9BYH8 718 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 FEZ2Q9UHY8 353 aaPredicted RBP9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 AMFRQ9UKV5 643 aa9.42□□□□□ -0.9
SNRNP40-202ENST00000373720 RIPK3Q9Y572 518 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms