RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 EMILIN3Q9NT22 766 aa12.53□□□□□ -0.4
PTPN1-201ENST00000371621 SLC12A6Q9UHW9 1150 aa12.53□□□□□ -0.4
PTPN1-201ENST00000371621 FAM187AA6NFU0 413 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 F8W031 263 aaPredicted RBP12.52□□□□□ -0.4
PTPN1-201ENST00000371621 O00370 1275 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ZNF263O14978 683 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ALOX15P16050 662 aaPredicted RBP12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ADD2P35612 726 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 MTTPP55157 894 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ATP2C1P98194 919 aaPredicted RBP12.52□□□□□ -0.4
PTPN1-201ENST00000371621 PPP2R5BQ15173 497 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 CNGA2Q16280 664 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 TBC1D25Q3MII6 688 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 NEK8Q86SG6 692 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 SESTD1Q86VW0 696 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ZBED8Q8IZ13 594 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ATP6V0A1Q93050 837 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ANKRD27Q96NW4 1050 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 GCNAQ96QF7 691 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ZNF287Q9HBT7 754 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 DDX28Q9NUL7 540 aaKnown RBP12.52□□□□□ -0.4
PTPN1-201ENST00000371621 ANKFY1Q9P2R3 1169 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 SALL4Q9UJQ4 1053 aa12.52□□□□□ -0.4
PTPN1-201ENST00000371621 NRXN1Q9ULB1 1477 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 MEIS1O00470 390 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 PEX1O43933 1283 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 NMT2O60551 498 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 TCN1P20061 433 aaPredicted RBP12.52□□□□□ -0.41
PTPN1-201ENST00000371621 KHDC1Q4VXA5 237 aaKnown RBP12.52□□□□□ -0.41
PTPN1-201ENST00000371621 STXBP4Q6ZWJ1 553 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 MARK2Q7KZI7 788 aaKnown RBP12.52□□□□□ -0.41
PTPN1-201ENST00000371621 LCORLQ8N3X6 602 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 PPP4R1Q8TF05 950 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 PYROXD1Q8WU10 500 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 PYDC1Q8WXC3 89 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 CCDC127Q96BQ5 260 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 CYLDQ9NQC7 956 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 BCAP29Q9UHQ4 241 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 IGSF1Q8N6C5 1336 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 CREB1P16220 341 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 EARS2Q5JPH6 523 aaKnown RBP12.52□□□□□ -0.41
PTPN1-201ENST00000371621 MEI1Q5TIA1 1274 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 SFR1Q86XK3 245 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 PNMA1Q8ND90 353 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 DDHD1Q8NEL9 900 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 IP6K1Q92551 441 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 TSSK1BQ9BXA7 367 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 CDC42EP4Q9H3Q1 356 aaKnown RBP12.52□□□□□ -0.41
PTPN1-201ENST00000371621 TMOD3Q9NYL9 352 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 SAP30BPQ9UHR5 308 aaKnown RBP12.52□□□□□ -0.41
PTPN1-201ENST00000371621 ZNF229Q9UJW7 825 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 ATP11BQ9Y2G3 1177 aa12.52□□□□□ -0.41
PTPN1-201ENST00000371621 NEXMIFQ5QGS0 1516 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CDK12Q9NYV4 1490 aaPredicted RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 NPHP4O75161 1426 aaPredicted RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 USP1O94782 785 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 NFKBIAP25963 317 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TUBP50607 506 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 MAPK10P53779 464 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 OTUD4Q01804 1114 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 LIN52Q52LA3 116 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 C1orf228Q6PIY5 440 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 RBM44Q6ZP01 1051 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TSHZ1Q6ZSZ6 1077 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PATL1Q86TB9 770 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 IGDCC4Q8TDY8 1250 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 L3MBTL3Q96JM7 780 aaPredicted RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PIH1D3Q9NQM4 214 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PCMTD2Q9NV79 361 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PKD2L1Q9P0L9 805 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 MAD1L1Q9Y6D9 718 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 AFF2P51816 1311 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CLDN3O15551 220 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 LDHAP00338 332 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TPBGLP0DKB5 382 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 STAT2P52630 851 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 LRRC63Q05C16 580 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 BFSP1Q12934 665 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 KRT25Q7Z3Z0 450 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CADPS2Q86UW7 1296 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TBCKQ8TEA7 893 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CNKSR1Q969H4 720 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 ERGIC2Q96RQ1 377 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 ZWILCHQ9H900 591 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PRDM11Q9NQV5 511 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TMCO1Q9UM00 188 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CTDP1Q9Y5B0 961 aaPredicted RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 RPS6KL1Q9Y6S9 549 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 COMMD3-BMI1R4GMX3 469 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TBC1D12O60347 775 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PIAS1O75925 651 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 ABL2P42684 1182 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 MAGEA8P43361 318 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TRAPPC10P48553 1259 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 DHX34Q14147 1143 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CTTNQ14247 550 aaKnown RBP12.51□□□□□ -0.41
PTPN1-201ENST00000371621 TRIM16LQ309B1 348 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CNPY1Q3B7I2 92 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 WASHC2DQ5SRD0 308 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms