RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DDX39BQ13838 428 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 CDC42EP5Q6NZY7 148 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 ALKBH5Q6P6C2 394 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 DBR1Q9UK59 544 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 SLC16A1P53985 500 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 ISLR2Q6UXK2 745 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 RRM2BQ7LG56 351 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 NSUN6Q8TEA1 469 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 AGO2Q9UKV8 859 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 CA4P22748 312 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 FASTKD1Q53R41 847 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 ALFQ53S48 1182 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 LINC00301Q8NCQ3 95 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 SGF29Q96ES7 293 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 RBM41Q96IZ5 413 aaKnown RBP7.82□□□□□ -1.16
VPS13A-202ENST00000357409 GPATCH2LQ9NWQ4 482 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 GTF2A1LQ9UNN4 478 aa7.82□□□□□ -1.16
VPS13A-202ENST00000357409 MAP3K13O43283 966 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ESRRAP11474 423 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 AKAP5P24588 427 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 NEUROG2Q9H2A3 272 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 EMSYQ7Z589 1322 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 NT5C1B-RDH14C9J2C7 533 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ATMINO43313 823 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MAN2A1Q16706 1144 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ZRANB3Q5FWF4 1079 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ZNF697Q5TEC3 545 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 EFCAB13Q8IY85 973 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 APOL2Q9BQE5 337 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 UBP1Q9NZI7 540 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 EXOC1LA0A1B0GW35 172 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 GTPBP10A4D1E9 387 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 PEX10O60683 326 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ECEL1O95672 775 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ALDH1A1P00352 501 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MT-CO1P00395 513 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MAP3K7CLP57077 242 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 DCAF6Q58WW2 860 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 HVCN1Q96D96 273 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ATG4CQ96DT6 458 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 CEP19Q96LK0 163 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MIR1-1HGQ9H1L0 117 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 GOLPH3LQ9H4A5 285 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MYOZ2Q9NPC6 264 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 SENP1Q9P0U3 644 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MYL4P12829 197 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 CHRNA3P32297 505 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MTF1Q14872 753 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 TRBV23OR9-2A0A075B6M9 112 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 WTIPA6NIX2 430 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 SPDYE5A6NIY4 337 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 GYS1P13807 737 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 QARSP47897 775 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 SLC7A14Q8TBB6 771 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 RASSF4Q9H2L5 321 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 OSGEPL1Q9H4B0 414 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 MRPL47Q9HD33 250 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ZNF70Q9UC06 446 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 DRAP1Q14919 205 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 BEND6Q5SZJ8 279 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 TMC7Q7Z402 723 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 PALB2Q86YC2 1186 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 NUDCD3Q8IVD9 361 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 CARNMT1Q8N4J0 409 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ENAHQ8N8S7 591 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 NETO2Q8NC67 525 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 DHX36Q9H2U1 1008 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 ARHGEF10O15013 1369 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 P4HA2O15460 535 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 TLR2O60603 784 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 FGGP02679 453 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 GRAMD1BQ3KR37 738 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 C16orf59Q7L2K0 433 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 JPH2Q9BR39 696 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 PRKCBP05771 671 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 P4HBP07237 508 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 PRR5LQ6MZQ0 368 aa7.81□□□□□ -1.16
VPS13A-202ENST00000357409 POP1Q99575 1024 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 RSPH9Q9H1X1 276 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 TYW1Q9NV66 732 aaKnown RBP7.81□□□□□ -1.16
VPS13A-202ENST00000357409 SUPT3HO75486 399 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 B3GAT3O94766 335 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ZRANB2O95218 330 aaKnown RBP eCLIP7.8□□□□□ -1.163e-7■■■■■ 46.6
VPS13A-202ENST00000357409 ITGB3P05106 788 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CYP2C8P10632 490 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CHRM3P20309 590 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 CDH6P55285 790 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 FAM182AQ5T1J6 154 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 LRRN4Q8WUT4 740 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PPP1R14AQ96A00 147 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 DCP1AQ9NPI6 582 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 PCDHAC2Q9Y5I4 1007 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ITGA4P13612 1032 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ZSCAN26Q16670 478 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 ACER1Q8TDN7 264 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 HSPBP1Q9NZL4 362 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 MARCOQ9UEW3 520 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-202ENST00000357409 FEM1BQ9UK73 627 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 TRAF3IP3Q9Y228 551 aa7.8□□□□□ -1.16
VPS13A-202ENST00000357409 IGSF1Q8N6C5 1336 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms