RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 UBE2SQ16763 222 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SPICE1Q8N0Z3 855 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SAMD3Q8N6K7 520 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 AGAP11Q8TF27 550 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 RAB3IPQ96QF0 476 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 ECT2Q9H8V3 914 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SYNGAP1Q96PV0 1343 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 MIF4GDA9UHW6 222 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 KIAA0391O15091 583 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 TBX3O15119 743 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 DDX3YO15523 660 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SMNDC1O75940 238 aaKnown RBP eCLIP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 PON1P27169 355 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 CIITAP33076 1130 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 STAT1P42224 750 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 HADHBP55084 474 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SARNPP82979 210 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 CCDC15Q0P6D6 951 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 MAPK7Q13164 816 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 CAPRIN2Q6IMN6 1127 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 JAMLQ86YT9 394 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 CFAP61Q8NHU2 1237 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 ANO3Q9BYT9 981 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 CELF4Q9BZC1 486 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 AZI2Q9H6S1 392 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 ARHGEF3Q9NR81 526 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SLC5A4Q9NY91 659 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 ARL2BPQ9Y2Y0 163 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 MRPL11Q9Y3B7 192 aaKnown RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 STK24Q9Y6E0 443 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 SPDYE3A6NKU9 549 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L15C9J2P7 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L13C9JLJ4 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L11C9JVI0 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L18D6R9N7 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L22D6RA61 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L17D6RBQ6 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L19D6RCP7 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L20D6RJB6 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 PDXKO00764 312 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 PHF2O75151 1096 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 ATP5HO75947 161 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 CYP3A4P08684 503 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 XRCC5P13010 732 aaKnown RBP17.06■□□□□ 0.32
HMGA1-202ENST00000347617 IBSPP21815 317 aaPredicted RBP17.06■□□□□ 0.32
HMGA1-202ENST00000347617 RPL13P26373 211 aaKnown RBP17.06■□□□□ 0.32
HMGA1-202ENST00000347617 SREBF1P36956 1147 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 PPATQ06203 517 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L24Q0WX57 530 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 BLMHQ13867 455 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 EPHA7Q15375 998 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 CNGA2Q16280 664 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 NBPF12Q5TAG4 269 aaPredicted RBP17.06■□□□□ 0.32
HMGA1-202ENST00000347617 USP17L6PQ6QN14 398 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 SCFD1Q8WVM8 642 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 GRAMD1AQ96CP6 724 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 SPDL1Q96EA4 605 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 PRMT1Q99873 361 aaKnown RBP17.06■□□□□ 0.32
HMGA1-202ENST00000347617 TRIM51Q9BSJ1 452 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 AS3MTQ9HBK9 375 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 CTNNAL1Q9UBT7 734 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 PCYOX1Q9UHG3 505 aa17.06■□□□□ 0.32
HMGA1-202ENST00000347617 DDX25Q9UHL0 483 aaKnown RBP17.06■□□□□ 0.32
HMGA1-202ENST00000347617 POTEFA5A3E0 1075 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 UBOX5O94941 541 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 GJB6O95452 261 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 POTEIP0CG38 1075 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 POTEJP0CG39 1038 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 RARGP13631 454 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 NR2F2P24468 414 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 PLS1Q14651 629 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 TCEAL1Q15170 157 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 ENOX2Q16206 610 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 SUPT20HL1Q3ZLR7 823 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 Q4G0T1 1027 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 ANGEL2Q5VTE6 544 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 POTEEQ6S8J3 1075 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 ZDHHC24Q6UX98 284 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 EP400NLQ6ZTU2 488 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 TRMT10CQ7L0Y3 403 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 KCNK18Q7Z418 384 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 SCYL3Q8IZE3 742 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 GLIS3Q8NEA6 775 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 MORC4Q8TE76 937 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 CTNNBL1Q8WYA6 563 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 RNF25Q96BH1 459 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 KLHL29Q96CT2 875 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 THOC1Q96FV9 657 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 SYT17Q9BSW7 474 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 RXFP1Q9HBX9 757 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 POTEMA6NI47 508 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 RASGRF2O14827 1237 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 SLC37A4O43826 429 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 TDP2O95551 362 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 ALDH5A1P51649 535 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 MAP2K1Q02750 393 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 FAM133BQ5BKY9 247 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 HERC4Q5GLZ8 1057 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 MIS18BP1Q6P0N0 1132 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 CYFIP1Q7L576 1253 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms