RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 PRPHP41219 470 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 TMEM173Q86WV6 379 aaPredicted RBP22.31■■□□□ 1.16
SYNE2-201ENST00000341472 SMRP1Q8NCR6 262 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 SNX29Q8TEQ0 813 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 GAD1Q99259 594 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 POP1Q99575 1024 aaKnown RBP22.31■■□□□ 1.16
SYNE2-201ENST00000341472 TMEM175Q9BSA9 504 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 BHMT2Q9H2M3 363 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 FZD8Q9H461 694 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 DDX19AQ9NUU7 478 aaKnown RBP22.31■■□□□ 1.16
SYNE2-201ENST00000341472 PRMT7Q9NVM4 692 aaPredicted RBP22.31■■□□□ 1.16
SYNE2-201ENST00000341472 DNM3Q9UQ16 869 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 HES2Q9Y543 173 aa22.31■■□□□ 1.16
SYNE2-201ENST00000341472 CA8P35219 290 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 KCNC3Q14003 757 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 IL17AQ16552 155 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 LARP1BQ659C4 914 aaKnown RBP22.3■■□□□ 1.16
SYNE2-201ENST00000341472 SLC27A1Q6PCB7 646 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 PPP4R3CPQ6ZMV5 832 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 DEPTORQ8TB45 409 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 IFT74Q96LB3 600 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 PRIMPOLQ96LW4 560 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 APOL6Q9BWW8 343 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 GIT1Q9Y2X7 761 aa22.3■■□□□ 1.16
SYNE2-201ENST00000341472 FNDC1Q4ZHG4 1894 aaPredicted RBP22.3■■□□□ 1.16
SYNE2-201ENST00000341472 ARL5CA6NH57 179 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 B4GALT3O60512 393 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 NPTXRO95502 500 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 CTSAP10619 480 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 ALADP13716 330 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 GIT2Q14161 759 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 PPP2R5AQ15172 486 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 MAPK6Q16659 721 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 CDCA2Q69YH5 1023 aaPredicted RBP22.29■■□□□ 1.16
SYNE2-201ENST00000341472 ANKRD54Q6NXT1 300 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 LLGL2Q6P1M3 1020 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 CDR2LQ86X02 465 aaPredicted RBP22.29■■□□□ 1.16
SYNE2-201ENST00000341472 BCL7CQ8WUZ0 217 aaPredicted RBP22.29■■□□□ 1.16
SYNE2-201ENST00000341472 BSNDQ8WZ55 320 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 POLD4Q9HCU8 107 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 STK39Q9UEW8 545 aa22.29■■□□□ 1.16
SYNE2-201ENST00000341472 USP15Q9Y4E8 981 aaPredicted RBP22.29■■□□□ 1.16
SYNE2-201ENST00000341472 PP2D1A8MPX8 630 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 NRP1O14786 923 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 INPPL1O15357 1258 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 CLASP2O75122 1294 aaKnown RBP22.28■■□□□ 1.16
SYNE2-201ENST00000341472 HOXB8P17481 243 aaPredicted RBP22.28■■□□□ 1.16
SYNE2-201ENST00000341472 CDC25AP30304 524 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 NAMPTP43490 491 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 FAM187BQ17R55 369 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 TMEM132AQ24JP5 1023 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 KIFAP3Q92845 792 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 ZBP1Q9H171 429 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 MIOSQ9NXC5 875 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 PARP2Q9UGN5 583 aa22.28■■□□□ 1.16
SYNE2-201ENST00000341472 ACKR2O00590 384 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 NR1I2O75469 434 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 LIG1P18858 919 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 AKAP5P24588 427 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 MLH1P40692 756 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 PRPF4BQ13523 1007 aaKnown RBP22.27■■□□□ 1.16
SYNE2-201ENST00000341472 AUTS2Q8WXX7 1259 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 CASP10Q92851 521 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 S1PR5Q9H228 398 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 NXF3Q9H4D5 531 aaKnown RBP22.27■■□□□ 1.16
SYNE2-201ENST00000341472 IRAK3Q9Y616 596 aa22.27■■□□□ 1.16
SYNE2-201ENST00000341472 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.26■■□□□ 1.15
SYNE2-201ENST00000341472 E9PMD0 336 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 OR1G1P47890 313 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 SCNN1GP51170 649 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 EFNA5P52803 228 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 ATP2C1P98194 919 aaPredicted RBP22.26■■□□□ 1.15
SYNE2-201ENST00000341472 ZRSR1Q15695 479 aaKnown RBP22.26■■□□□ 1.15
SYNE2-201ENST00000341472 TMEM31Q5JXX7 168 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 SYCE2Q6PIF2 218 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 COLGALT2Q8IYK4 626 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 ZFP42Q96MM3 310 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 PRG3Q9Y2Y8 225 aaPredicted RBP22.26■■□□□ 1.15
SYNE2-201ENST00000341472 HCFC2Q9Y5Z7 792 aa22.26■■□□□ 1.15
SYNE2-201ENST00000341472 N4BP3O15049 544 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 PRKCBP05771 671 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 COL9A1P20849 921 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 TPRNQ4KMQ1 711 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 SUSD6Q92537 303 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 MMTAG2Q9BU76 263 aaKnown RBP22.25■■□□□ 1.15
SYNE2-201ENST00000341472 COLEC11Q9BWP8 271 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 APOL5Q9BWW9 433 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 PHF7Q9BWX1 381 aaPredicted RBP22.25■■□□□ 1.15
SYNE2-201ENST00000341472 VN1R3Q9BXE9 311 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 KLK14Q9P0G3 267 aa22.25■■□□□ 1.15
SYNE2-201ENST00000341472 TTLL13PA6NNM8 815 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 DCXO43602 365 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 GPR37L1O60883 481 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 DSC1Q08554 894 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 LRFN3Q9BTN0 628 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 CCDC113Q9H0I3 377 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 PDZD7Q9H5P4 517 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 USP20Q9Y2K6 914 aa22.24■■□□□ 1.15
SYNE2-201ENST00000341472 VWA3AA6NCI4 1184 aa22.23■■□□□ 1.15
SYNE2-201ENST00000341472 CCDC169A6NNP5 214 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms