RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 IDO1P14902 403 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 MLH1P40692 756 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 TRAPPC10P48553 1259 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 SPAG1Q07617 926 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 EIF1ADQ8N9N8 165 aaKnown RBP12.72□□□□□ -0.37
RTN3-203ENST00000341307 STKLD1Q8NE28 680 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 PAGE5Q96GU1 130 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 RMDN2Q96LZ7 410 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 ZMYND12Q9H0C1 365 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 ZNHIT6Q9NWK9 470 aaKnown RBP12.72□□□□□ -0.37
RTN3-203ENST00000341307 DAAM1Q9Y4D1 1078 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 USH1CQ9Y6N9 552 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 ZNF646O15015 1829 aaPredicted RBP12.72□□□□□ -0.37
RTN3-203ENST00000341307 TMEM247A6NEH6 219 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 BCRP11274 1271 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 CD97P48960 835 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 HPCAP84074 193 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 SOGA3Q5TF21 947 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 SH3RF1Q7Z6J0 888 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 IRF2BP1Q8IU81 584 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 FAM13CQ8NE31 585 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 TTC8Q8TAM2 541 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 SNRNP27Q8WVK2 155 aaKnown RBP12.72□□□□□ -0.37
RTN3-203ENST00000341307 IQCDQ96DY2 449 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 RAB3IPQ96QF0 476 aaPredicted RBP12.72□□□□□ -0.37
RTN3-203ENST00000341307 SELENOSQ9BQE4 189 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 BLZF1Q9H2G9 400 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 SBF1O95248 1867 aa12.72□□□□□ -0.37
RTN3-203ENST00000341307 A0A1W2PQC6 194 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 BHMG1C9JSJ3 638 aaPredicted RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 GDF11O95390 407 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 BMP15O95972 392 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 HDAC4P56524 1084 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 PARP6Q2NL67 630 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 LETM2Q2VYF4 491 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 SH2D4BQ5SQS7 431 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 DAB2IPQ5VWQ8 1189 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 NELFBQ8WX92 580 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 PLIN2Q99541 437 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 NSRP1Q9H0G5 558 aaKnown RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 ETNK1Q9HBU6 452 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 RXFP1Q9HBX9 757 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 ATP8A1Q9Y2Q0 1164 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 PCDHA13Q9Y5I0 950 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 SIPA1L1O43166 1804 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 UNC5CO95185 931 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 GJB6O95452 261 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 SKIV2L2P42285 1042 aaKnown RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 OLFML2BQ68BL8 750 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 DAGLBQ8NCG7 672 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 ABTB1Q969K4 478 aaPredicted RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 PPP2R3CQ969Q6 453 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 DDX50Q9BQ39 737 aaKnown RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 IFIH1Q9BYX4 1025 aaKnown RBP12.71□□□□□ -0.37
RTN3-203ENST00000341307 DPH5Q9H2P9 285 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 RIOX1Q9H6W3 641 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 RNF14Q9UBS8 474 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 GJA3Q9Y6H8 435 aa12.71□□□□□ -0.37
RTN3-203ENST00000341307 LGALS16A8MUM7 142 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 PPP1R11O60927 126 aaPredicted RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 AFPP02771 609 aaKnown RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 SNHG28P0DPA3 235 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 RTP1P59025 263 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 MTMR3Q13615 1198 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 CUL1Q13616 776 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 TTLL12Q14166 644 aaPredicted RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 KCTD19Q17RG1 926 aaPredicted RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 TMC3Q7Z5M5 1100 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 SCUBE1Q8IWY4 988 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 ADGRF4Q8IZF3 695 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 NRG4Q8WWG1 115 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 USP20Q9Y2K6 914 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 CLRN2A0PK11 232 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 CCNT1O60563 726 aaKnown RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 EEF2P13639 858 aaKnown RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 IFNAR2P48551 515 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 KLK7P49862 253 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 PDE6CP51160 858 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 JAG1P78504 1218 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 CXCL9Q07325 125 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 ZNF543Q08ER8 600 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 SPA17Q15506 151 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 CERKLQ49MI3 558 aaPredicted RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 LIN52Q52LA3 116 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 ZNF362Q5T0B9 420 aaPredicted RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 TMEM53Q6P2H8 277 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 ZC3H18Q86VM9 953 aaKnown RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 KLHL7Q8IXQ5 586 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 LRRC43Q8N309 656 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 JDP2Q8WYK2 163 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 MTMR8Q96EF0 704 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 GSDMAQ96QA5 445 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 JMJD4Q9H9V9 463 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 C6orf50Q9HD87 102 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 FAM114A2Q9NRY5 505 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 INTS9Q9NV88 658 aaKnown RBP12.7□□□□□ -0.38
RTN3-203ENST00000341307 RWDD2AQ9UIY3 292 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 SERPINA10Q9UK55 444 aa12.7□□□□□ -0.38
RTN3-203ENST00000341307 TBC1D30Q9Y2I9 924 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms