RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SLU7O95391 586 aaKnown RBP10.9□□□□□ -0.67
USP54-201ENST00000339859 AXLP30530 894 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 RBL2Q08999 1139 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 KCNH2Q12809 1159 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 SGSM1Q2NKQ1 1148 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 CELF3Q5SZQ8 465 aaKnown RBP10.9□□□□□ -0.67
USP54-201ENST00000339859 TRIM72Q6ZMU5 477 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 TBC1D31Q96DN5 1066 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 TRIM9Q9C026 710 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 STAP1Q9ULZ2 295 aa10.9□□□□□ -0.67
USP54-201ENST00000339859 H7C0C1 242 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 IVLP07476 585 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 MAN1A1P33908 653 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 ATP5OP48047 213 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 LMNB2Q03252 620 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 KRT31Q15323 416 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 REPS2Q8NFH8 660 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 BPIFA3Q9BQP9 254 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP54-201ENST00000339859 BUB1O43683 1085 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 KRT1P04264 644 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 PCSK1P29120 753 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 CNTN2Q02246 1040 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 MESDQ14696 234 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 TMEM132BQ14DG7 1078 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 ZNF410Q86VK4 478 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP54-201ENST00000339859 RAB17Q9H0T7 212 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 HAUS4Q9H6D7 363 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 SETD4Q9NVD3 440 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 ASNSD1Q9NWL6 643 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 HYOU1Q9Y4L1 999 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 ROBO3Q96MS0 1386 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 GNA15P30679 374 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 GRK4P32298 578 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 BZW1Q7L1Q6 419 aaKnown RBP10.89□□□□□ -0.67
USP54-201ENST00000339859 NECAB2Q7Z6G3 386 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 GANCQ8TET4 914 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 PPP1R12CQ9BZL4 782 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 VTNP04004 478 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 NNMTP40261 264 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 BTBD8Q5XKL5 378 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 RUFY4Q6ZNE9 571 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 STKLD1Q8NE28 680 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 PRPF31Q8WWY3 499 aaKnown RBP10.89□□□□□ -0.67
USP54-201ENST00000339859 TMEM60Q9H2L4 133 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 MSRAQ9UJ68 235 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 LSM7Q9UK45 103 aaKnown RBP10.89□□□□□ -0.67
USP54-201ENST00000339859 EMSYQ7Z589 1322 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 CASZ1Q86V15 1759 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 GLI3P10071 1580 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 H0YHG0 523 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 HEXIM1O94992 359 aaKnown RBP10.89□□□□□ -0.67
USP54-201ENST00000339859 LRG1P02750 347 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 CYP3A4P08684 503 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 MYBL1P10243 752 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 COG7P83436 770 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 BTNL9Q6UXG8 535 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 IFT20Q8IY31 132 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 SLC5A5Q92911 643 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 HPCAL4Q9UM19 191 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 TBX20Q9UMR3 447 aa10.89□□□□□ -0.67
USP54-201ENST00000339859 EPN1Q9Y6I3 576 aaPredicted RBP10.89□□□□□ -0.67
USP54-201ENST00000339859 LOC102724159A0A0B4J2E5 919 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 FAM170AA1A519 330 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 TRIM49BA6NDI0 452 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 EVI5O60447 810 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 APOEP02649 317 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 YBX3P16989 372 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP54-201ENST00000339859 PSMA2P25787 234 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CTCFP49711 727 aaPredicted RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 PWP2Q15269 919 aaKnown RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 ZNF394Q53GI3 561 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 LGSNQ5TDP6 509 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 MRPL9Q9BYD2 267 aaKnown RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 MAGED2Q9UNF1 606 aaPredicted RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 RSPH10B2B2RC85 870 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 KCNK3O14649 394 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 RSPH10BP0C881 870 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CLCN3P51790 818 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 SNRNP35Q16560 246 aaKnown RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 KAZNQ674X7 775 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 MPZL3Q6UWV2 235 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 IFNL1Q8IU54 200 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 EFCAB13Q8IY85 973 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CCDC170Q8IYT3 715 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CYBBP04839 570 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 RECQLP46063 649 aaPredicted RBP10.88□□□□□ -0.67
USP54-201ENST00000339859 ALDH1A3P47895 512 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 FLT3LGP49771 235 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 TAF6P49848 677 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 ZNF449Q6P9G9 518 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 BBOF1Q8ND07 529 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CHAMP1Q96JM3 812 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 SH2D3AQ9BRG2 576 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 F8W8V4 182 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 CRCPO75575 148 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 ZNF18P17022 549 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 ACOT2P49753 483 aa10.88□□□□□ -0.67
USP54-201ENST00000339859 NPEPPSP55786 919 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms