RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 GRAMD1AQ96CP6 724 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 PRR12Q9ULL5 1215 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 TTC7AQ9ULT0 858 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-201ENST00000323668 ARL2BPQ9Y2Y0 163 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 TMEM270Q6UE05 265 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 NKX2-3Q8TAU0 364 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 RUSC1Q9BVN2 902 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 CALN1Q9BXU9 219 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 FEM1BQ9UK73 627 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 USP15Q9Y4E8 981 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-201ENST00000323668 A0A0A6YYK5 440 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-201ENST00000323668 MSH4O15457 936 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 KRT76Q01546 638 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 SLFN12LQ6IEE8 588 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 TRPM8Q7Z2W7 1104 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 SPATA21Q7Z572 469 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 APBB1IPQ7Z5R6 666 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-201ENST00000323668 PACS2Q86VP3 889 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 PDCD7Q8N8D1 485 aaKnown RBP15.74■□□□□ 0.11
TCOF1-201ENST00000323668 ZNF341Q9BYN7 854 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 AGPAT3Q9NRZ7 376 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 GINS2Q9Y248 185 aa15.74■□□□□ 0.11
TCOF1-201ENST00000323668 CDH16O75309 829 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 ERVK-9P63128 1117 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 TFAMQ00059 246 aaKnown RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 LONRF1Q17RB8 773 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 IZUMO3Q5VZ72 239 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 MIS18BP1Q6P0N0 1132 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 GBP5Q96PP8 586 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 ROPN1BQ9BZX4 212 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 ROPN1Q9HAT0 212 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 STK32BQ9NY57 414 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 GGT7Q9UJ14 662 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 PCDHGC5Q9Y5F6 944 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 CCND2P30279 289 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 LRRC55Q6ZSA7 311 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 APTXQ7Z2E3 356 aaKnown RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 LDHDQ86WU2 507 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 DNAAF5Q86Y56 855 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 SLC30A5Q8TAD4 765 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 VCX3BQ9H321 246 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 FOXN3O00409 490 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 PSMC5P62195 406 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 EVX2Q03828 476 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 STAT4Q14765 748 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 DCAF15Q66K64 600 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 TRIM42Q8IWZ5 723 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 PPP4R1Q8TF05 950 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 OSGEPQ9NPF4 335 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 TLR3O15455 904 aaKnown RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 MYBL1P10243 752 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 PLCB4Q15147 1175 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 BARGINQ6ZT62 677 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 SYDE1Q6ZW31 735 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 ERICH1Q86X53 443 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 MSTO1Q9BUK6 570 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 TRAIPQ9BWF2 469 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 HERC5Q9UII4 1024 aaKnown RBP15.73■□□□□ 0.11
TCOF1-201ENST00000323668 TRAF3IP3Q9Y228 551 aa15.73■□□□□ 0.11
TCOF1-201ENST00000323668 UBE4BO95155 1302 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 CES2O00748 559 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 ITGA4P13612 1032 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 TMEM35BQ8NCS4 154 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 BAP1Q92560 729 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 SH2D3AQ9BRG2 576 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 NXF1Q9UBU9 619 aaKnown RBP15.72■□□□□ 0.11
TCOF1-201ENST00000323668 TACC3Q9Y6A5 838 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 ECE2O60344 883 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 LDHAP00338 332 aaKnown RBP15.72■□□□□ 0.11
TCOF1-201ENST00000323668 FBXO25Q8TCJ0 367 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 TXNDC9O14530 226 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 SFNP31947 248 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 SLC1A1P43005 524 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 ARL4CP56559 192 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 GLIS3Q8NEA6 775 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 TRPC5Q9UL62 973 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-201ENST00000323668 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.72■□□□□ 0.11
TCOF1-201ENST00000323668 NID2Q14112 1375 aa15.72■□□□□ 0.11
TCOF1-201ENST00000323668 GTPBP10A4D1E9 387 aaKnown RBP15.71■□□□□ 0.11
TCOF1-201ENST00000323668 P4HA2O15460 535 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 ESRRAP11474 423 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-201ENST00000323668 MAP7D1Q3KQU3 841 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 KCTD6Q8NC69 237 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 TMEM120BA0PK00 339 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 GPS1Q13098 491 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 PRKG1Q13976 671 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 RCN2Q14257 317 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 KYNUQ16719 465 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 TTMPQ5BVD1 217 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 TRIM55Q9BYV6 548 aa15.71■□□□□ 0.11
TCOF1-201ENST00000323668 CHORDC1Q9UHD1 332 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-201ENST00000323668 CAND2O75155 1236 aa15.71■□□□□ 0.1
TCOF1-201ENST00000323668 PSMC6P62333 389 aa15.71■□□□□ 0.1
TCOF1-201ENST00000323668 ZNF394Q53GI3 561 aa15.71■□□□□ 0.1
TCOF1-201ENST00000323668 HP1BP3Q5SSJ5 553 aaPredicted RBP15.71■□□□□ 0.1
TCOF1-201ENST00000323668 CYB5D1Q6P9G0 228 aa15.71■□□□□ 0.1
TCOF1-201ENST00000323668 DARS2Q6PI48 645 aaKnown RBP15.71■□□□□ 0.1
TCOF1-201ENST00000323668 COL23A1Q86Y22 540 aaPredicted RBP15.71■□□□□ 0.1
TCOF1-201ENST00000323668 SLC13A5Q86YT5 568 aaPredicted RBP15.71■□□□□ 0.1
TCOF1-201ENST00000323668 PRPF38AQ8NAV1 312 aaKnown RBP15.71■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms