RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 VAMP7P51809 220 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 DRP2Q13474 957 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 ANKRD20A8PQ5CZ79 823 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 PADI6Q6TGC4 694 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 C15orf52Q6ZUT6 534 aaKnown RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 CDAN1Q8IWY9 1227 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 MICALL2Q8IY33 904 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 LRRC34Q8IZ02 419 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 AKT1S1Q96B36 256 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 OSBPL7Q9BZF2 842 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 OLFML3Q9NRN5 406 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 FAM198AQ9UFP1 575 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 PRR12Q9ULL5 1215 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 THAP12O43422 761 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 PHF2O75151 1096 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 MYCNP04198 464 aaPredicted RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 HSPA6P17066 643 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 STX2P32856 288 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 NPEPPSP55786 919 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 TNFAIP1Q13829 316 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 SLMAPQ14BN4 828 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 MOXD1Q6UVY6 613 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 EEPD1Q7L9B9 569 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 ZNF720Q7Z2F6 126 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 CROCCP2Q86T23 111 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 SLC30A5Q8TAD4 765 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 TACO1Q9BSH4 297 aaKnown RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 POLR3CQ9BUI4 534 aaPredicted RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 NUP85Q9BW27 656 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 SIX2Q9NPC8 291 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 USTQ9Y2C2 406 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 IGKV6D-41A0A0C4DH26 115 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 GTPBP10A4D1E9 387 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 SLITRK3O94933 977 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 MKRN3Q13064 507 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CAPN12Q6ZSI9 719 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 ZNF365Q70YC5 407 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 INTS8Q75QN2 995 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 ZNF564Q8TBZ8 553 aaPredicted RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 ARHGEF2Q92974 986 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 ELMO3Q96BJ8 720 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 RUNDC3BQ96NL0 473 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 WDR11Q9BZH6 1224 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CXorf56Q9H5V9 222 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 NKIRAS1Q9NYS0 192 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CNOT7Q9UIV1 285 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 MYO3BQ8WXR4 1341 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CYP3A7-CYP3A51PA0A087WV96 503 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 H0YGN5 161 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 IPO5O00410 1097 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 DNM1LO00429 736 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CYP3A7P24462 503 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 PDE6CP51160 858 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 Q4G0T1 1027 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CEP55Q53EZ4 464 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 FAM102BQ5T8I3 360 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 PHLDB3Q6NSJ2 640 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 FUKQ8N0W3 1084 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 TATDN2Q93075 761 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 WRNIP1Q96S55 665 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 MKNK1Q9BUB5 465 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 NFS1Q9Y697 457 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 ZHX2Q9Y6X8 837 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 IRS2Q9Y4H2 1338 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 RGL2O15211 777 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 EIF3DO15371 548 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 CLDN3O15551 220 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 ZBED4O75132 1171 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 GAS8O95995 478 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 HARSP12081 509 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 PEX3P56589 373 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 RWDD2BP57060 319 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 SPIRE1Q08AE8 756 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 RASGEF1CQ8N431 466 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 KAT5Q92993 513 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 THOC1Q96FV9 657 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 SERPINA10Q9UK55 444 aa11.29□□□□□ -0.6
COL3A1-202ENST00000317840 MRPL11Q9Y3B7 192 aaKnown RBP11.29□□□□□ -0.6
COL3A1-202ENST00000317840 NHSL1Q5SYE7 1610 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 GOLGB1Q14789 3259 aaKnown RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 CCT8L1PA6NM43 557 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 OPLAHO14841 1288 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 RPL21P46778 160 aaKnown RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 DLG4P78352 724 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 CYP4F22Q6NT55 531 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 P2RX7Q99572 595 aaKnown RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 CCDC77Q9BR77 488 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 CBWD1Q9BRT8 395 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 HEMGNQ9BXL5 484 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 FAM129AQ9BZQ8 928 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SEL1LQ9UBV2 794 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 ASNSP08243 561 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SLC8A1P32418 973 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 FNTAP49354 379 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 JAM2P57087 298 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 DGKZQ13574 1117 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 PPP2R5AQ15172 486 aa11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SWT1Q5T5J6 900 aaKnown RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 EPM2AIP1Q7L775 607 aaPredicted RBP11.28□□□□□ -0.6
COL3A1-202ENST00000317840 SLFN11Q7Z7L1 901 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms