RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ACO2Q99798 780 aaKnown RBP19.91■□□□□ 0.78
HMGA1-201ENST00000311487 DNAJC25Q9H1X3 360 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 SEMA6BQ9H3T3 888 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 RNF19AQ9NV58 838 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 TGFB1I1O43294 461 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 PLEKHG4Q58EX7 1191 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 TWF2Q6IBS0 349 aaKnown RBP19.9■□□□□ 0.78
HMGA1-201ENST00000311487 ADSSL1Q8N142 457 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 ANP32BQ92688 251 aaKnown RBP19.9■□□□□ 0.78
HMGA1-201ENST00000311487 ADAM2Q99965 735 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 CBWD1Q9BRT8 395 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 MRPL4Q9BYD3 311 aaKnown RBP19.9■□□□□ 0.78
HMGA1-201ENST00000311487 ST6GALNAC4Q9H4F1 302 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 PDZD7Q9H5P4 517 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 AGPAT5Q9NUQ2 364 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 KCNG1Q9UIX4 513 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 H0YCG3 227 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 ADSSP30520 456 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 STXBP4Q6ZWJ1 553 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 RNF169Q8NCN4 708 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 APOL6Q9BWW8 343 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 KCTD10Q9H3F6 313 aa19.9■□□□□ 0.78
HMGA1-201ENST00000311487 CNTNAP2Q9UHC6 1331 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 GOLGA8IPA6NC78 632 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 GOLGA8JA6NMD2 632 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 EIF3DO15371 548 aaKnown RBP eCLIP19.89■□□□□ 0.773e-11■□□□□ 8.3
HMGA1-201ENST00000311487 NPTXRO95502 500 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 FPGSQ05932 587 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 ANO6Q4KMQ2 910 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 ZBTB41Q5SVQ8 909 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 ANKRD40Q6AI12 368 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 CEP120Q8N960 986 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 TRIML1Q8N9V2 468 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 SLC17A8Q8NDX2 589 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 NELFBQ8WX92 580 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 SAAL1Q96ER3 474 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 TANC1Q9C0D5 1861 aa19.89■□□□□ 0.77
HMGA1-201ENST00000311487 A0A1B0GUA9 196 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 ZSCAN20P17040 1043 aaPredicted RBP19.88■□□□□ 0.77
HMGA1-201ENST00000311487 CYP2J2P51589 502 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 NCBP1Q09161 790 aaKnown RBP19.88■□□□□ 0.77
HMGA1-201ENST00000311487 FAM187BQ17R55 369 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 HSP90AA4PQ58FG1 418 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 TMEM192Q8IY95 271 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 GUF1Q8N442 669 aaKnown RBP19.88■□□□□ 0.77
HMGA1-201ENST00000311487 RDH13Q8NBN7 331 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 LINC01599Q8WXQ3 324 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 MED15Q96RN5 788 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 GBP3Q9H0R5 595 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 MEIS3P2A8K0S8 358 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 H0YGN5 161 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 CXCL10P02778 98 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 ZNF568Q3ZCX4 644 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 PPP4R3CPQ6ZMV5 832 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 ZNF365Q70YC5 407 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 THNSL1Q8IYQ7 743 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 ZNF710Q8N1W2 664 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 POMGNT1Q8WZA1 660 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 SEPT8Q92599 483 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 LBHD1Q9BQE6 289 aaPredicted RBP19.88■□□□□ 0.77
HMGA1-201ENST00000311487 TMEM206Q9H813 350 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 NR2E3Q9Y5X4 410 aa19.88■□□□□ 0.77
HMGA1-201ENST00000311487 CLDN3O15551 220 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 STX1AQ16623 288 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 BMT2Q1RMZ1 405 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 NOTUMQ6P988 496 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.87■□□□□ 0.777e-31■■■■■ 70.4
HMGA1-201ENST00000311487 USP38Q8NB14 1042 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 LPPQ93052 612 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 PRIMPOLQ96LW4 560 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 RNF39Q9H2S5 420 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 AGPAT3Q9NRZ7 376 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 EXOC7Q9UPT5 735 aa19.87■□□□□ 0.77
HMGA1-201ENST00000311487 CCDC192P0DO97 292 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 TNFSF9P41273 254 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 MAGEA10P43363 369 aaPredicted RBP19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ACOT2P49753 483 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 STIM1Q13586 685 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ALCAMQ13740 583 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 UBXN11Q5T124 520 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 TRIM6Q9C030 488 aaPredicted RBP19.86■□□□□ 0.77
HMGA1-201ENST00000311487 CXCL16Q9H2A7 254 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 NXF3Q9H4D5 531 aaKnown RBP19.86■□□□□ 0.77
HMGA1-201ENST00000311487 PTPRHQ9HD43 1115 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 PDE4DIPQ5VU43 2346 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ENPP3O14638 875 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ABLIM1O14639 778 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 PSMA7O14818 248 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 TOM1L1O75674 476 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 UPP2O95045 317 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 AKAP5P24588 427 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 FAM117BQ6P1L5 589 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ARMCX5Q6P1M9 558 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 MLKLQ8NB16 471 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 P2RX5Q93086 422 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.86■□□□□ 0.777e-12■■■■□ 22.2
HMGA1-201ENST00000311487 CDT1Q9H211 546 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 IL23AQ9NPF7 189 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ANO10Q9NW15 660 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 TNFSF13BQ9Y275 285 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms