RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DBR1Q9UK59 544 aaKnown RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 MINPP1Q9UNW1 487 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 TULP4Q9NRJ4 1543 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 LMTK3Q96Q04 1460 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 FAM47DPA6NHR8 397 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L10C9JJH3 530 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 PRLRP16471 622 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 MRPS35P82673 323 aaKnown RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 RASSF3Q86WH2 238 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 C7orf31Q8N865 590 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 HPS3Q969F9 1004 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 DACT3Q96B18 629 aaPredicted RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 NGRNQ9NPE2 291 aaKnown RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 PALM3A6NDB9 673 aaPredicted RBP13.65□□□□□ -0.23
COL3A1-201ENST00000304636 NVLO15381 856 aaKnown RBP13.65□□□□□ -0.23
COL3A1-201ENST00000304636 ARSEP51690 589 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 SNAP25P60880 206 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 ERVK-24P63145 666 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 ZNF667Q5HYK9 610 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 RSPH3Q86UC2 560 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 JAMLQ86YT9 394 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.65□□□□□ -0.23
COL3A1-201ENST00000304636 ANKS1AQ92625 1134 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 VPS39Q96JC1 886 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 ZNF512BQ96KM6 892 aaPredicted RBP13.65□□□□□ -0.23
COL3A1-201ENST00000304636 NOD2Q9HC29 1040 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 CSADQ9Y600 493 aa13.65□□□□□ -0.23
COL3A1-201ENST00000304636 EMSYQ7Z589 1322 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 SNAP23O00161 211 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 SLC26A4O43511 780 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 TRIM49P0CI25 452 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 TRIM49CP0CI26 452 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 HIF1AQ16665 826 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 DNAL1Q4LDG9 190 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 DNAJC9Q8WXX5 260 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 VPS11Q9H270 941 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 LRRC4Q9HBW1 653 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 POLD4Q9HCU8 107 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 TRPC5Q9UL62 973 aaPredicted RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 USP31Q70CQ4 1352 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 HSD17B3P37058 310 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ERP44Q9BS26 406 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 GNA15P30679 374 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 STAT3P40763 770 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 TRIM28Q13263 835 aaKnown RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 PAPD7Q5XG87 772 aaKnown RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ALKBH8Q96BT7 664 aaKnown RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 FOXP3Q9BZS1 431 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ATP6V0A4Q9HBG4 840 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 TBC1D22BQ9NU19 505 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 SUCLA2Q9P2R7 463 aaPredicted RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 APEX2Q9UBZ4 518 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 HPS5Q9UPZ3 1129 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 AKT3Q9Y243 479 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 H3BQF6 201 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 SLC16A4O15374 487 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ASAP2O43150 1006 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ZNF18P17022 549 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 KIF19Q2TAC6 998 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 EDRF1Q3B7T1 1238 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 PPP6R3Q5H9R7 873 aaPredicted RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 TMEM154Q6P9G4 183 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 SLC44A5Q8NCS7 719 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 MYCBPAPQ8TBZ2 947 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ERP27Q96DN0 273 aa13.64□□□□□ -0.23
COL3A1-201ENST00000304636 RANBP17Q9H2T7 1088 aaKnown RBP13.64□□□□□ -0.23
COL3A1-201ENST00000304636 ADGRB3O60242 1522 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 UBE4BO95155 1302 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ZCCHC11Q5TAX3 1644 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ENO4A6NNW6 628 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 TAP1Q03518 808 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 PDXDC2PQ6P474 469 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 LCA5Q86VQ0 697 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 CNKSR1Q969H4 720 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ZMAT2Q96NC0 199 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 PLA2G12BQ9BX93 195 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 CD248Q9HCU0 757 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 PARVAQ9NVD7 372 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 TMEM120BA0PK00 339 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SPDYE16A6NNV3 312 aaPredicted RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 EYA4O95677 639 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SMARCA1P28370 1054 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ROR1Q01973 937 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 MED21Q13503 144 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 PTPAQ15257 358 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SPDYE2Q495Y8 402 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 ADGRF4Q8IZF3 695 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SYNE4Q8N205 404 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 FBXL13Q8NEE6 735 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 FAM213AQ9BRX8 229 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 FAM129AQ9BZQ8 928 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 PAMP19021 973 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 EIF2AK2P19525 551 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 MARK3P27448 753 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 MORF4L2Q15014 288 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SIX6OS1Q8N1H7 587 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 FLAD1Q8NFF5 587 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 EIF2AK1Q9BQI3 630 aaKnown RBP13.63□□□□□ -0.23
COL3A1-201ENST00000304636 TSSK1BQ9BXA7 367 aa13.63□□□□□ -0.23
COL3A1-201ENST00000304636 SLC13A1Q9BZW2 595 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms