RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RFX1P22670 979 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 GLUD2P49448 558 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 MXD4Q14582 209 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 INF2Q27J81 1249 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 PPP4R3AQ6IN85 833 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 NOTUMQ6P988 496 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 RUFY3Q7L099 469 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 C4orf19Q8IY42 314 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 GPR65Q8IYL9 337 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 HACE1Q8IYU2 909 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 DTWD2Q8NBA8 298 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 PLEKHA4Q9H4M7 779 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 MINDY3Q9H8M7 445 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 KCNMB3Q9NPA1 279 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 EPS15L1Q9UBC2 864 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 VAV3Q9UKW4 847 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 CLUHO75153 1309 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 CCDC195A0A1B0GUA6 201 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 EML1O00423 815 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 C2CD2LO14523 706 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 EPB41L2O43491 1005 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 SLC37A4O43826 429 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 POMCP01189 267 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 XBP1P17861 261 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 GBP2P32456 591 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 OR1G1P47890 313 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 EMC2Q15006 297 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 EPHA7Q15375 998 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 ANGPT1Q15389 498 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 UBXN11Q5T124 520 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 NEK8Q86SG6 692 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 FERMT3Q86UX7 667 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 COLGALT2Q8IYK4 626 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 ADSSL1Q8N142 457 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 RNF149Q8NC42 400 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 TMEM143Q96AN5 459 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 RXFP1Q9HBX9 757 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 PRG3Q9Y2Y8 225 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 CYP46A1Q9Y6A2 500 aa16.48■□□□□ 0.23
CCDC88B-201ENST00000301897 DOCK8Q8NF50 2099 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 TDRD15B5MCY1 1934 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 MTCL1Q9Y4B5 1905 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 STK25O00506 426 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 TEX28O15482 410 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 MARCH6O60337 910 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 CDKL5O76039 1030 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 PAPLNO95428 1278 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 YWHABP31946 246 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 DSG1Q02413 1049 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 CREMQ03060 361 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 POU5F1BQ06416 359 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 DSC1Q08554 894 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 TOB2Q14106 344 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 TFDP1Q14186 410 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 NPY5RQ15761 445 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 KIAA0319Q5VV43 1072 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 SMG7Q92540 1137 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 LXNQ9BS40 222 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 COLEC11Q9BWP8 271 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 ZSWIM4Q9H7M6 989 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 ZSWIM6Q9HCJ5 1215 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 GIT1Q9Y2X7 761 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 IPPQ9Y573 584 aa16.47■□□□□ 0.23
CCDC88B-201ENST00000301897 ARL5CA6NH57 179 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 PI15O43692 258 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 BAG4O95429 457 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 SRFP11831 508 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 AFF1P51825 1210 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 XKR9Q5GH70 373 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 SLFN12Q8IYM2 578 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 RNF168Q8IYW5 571 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 SMG8Q8ND04 991 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 MTRQ99707 1265 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 TRIM6Q9C030 488 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 CSRNP2Q9H175 543 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 MARCH5Q9NX47 278 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 ZDHHC7Q9NXF8 308 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 FNIP2Q9P278 1114 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 ZMYM2Q9UBW7 1377 aa16.46■□□□□ 0.23
CCDC88B-201ENST00000301897 N4BP1O75113 896 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 EFEMP2O95967 443 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 ID4P47928 161 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 PTENP60484 403 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 USP41Q3LFD5 358 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 IFNLR1Q8IU57 520 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 ZNF579Q8NAF0 562 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 FEZF2Q8TBJ5 459 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 GAD1Q99259 594 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 PHF20Q9BVI0 1012 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 TM6SF1Q9BZW5 370 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 PIDD1Q9HB75 910 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 CHST7Q9NS84 486 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 ZFP37Q9Y6Q3 630 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 DCHS1Q96JQ0 3298 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 ARID2Q68CP9 1835 aa16.45■□□□□ 0.22
CCDC88B-201ENST00000301897 CCNT1O60563 726 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 TSPAN1O60635 241 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 CFHP08603 1231 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms