RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 DPH5Q9H2P9 285 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 NOD2Q9HC29 1040 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 NCANO14594 1321 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 NVLO15381 856 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 ABHD2P08910 425 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PLCG1P19174 1290 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 CCNG1P51959 295 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 HDAC4P56524 1084 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PTENP60484 403 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PPP4CP60510 307 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 XIAPP98170 497 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 TBL3Q12788 808 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 RNF207Q6ZRF8 634 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ZFAND2BQ8WV99 257 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 RNPC3Q96LT9 517 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 C8orf37Q96NL8 207 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 SIKE1Q9BRV8 207 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 MMADHCQ9H3L0 296 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 COG4Q9H9E3 785 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 SAR1AQ9NR31 198 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 RBM12Q9NTZ6 932 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 TIAM2Q8IVF5 1701 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 KLRC4O43908 158 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 GPC4O75487 556 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ADORA1P30542 326 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 EHHADHQ08426 723 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ART3Q13508 389 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PKN1Q16512 942 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 KIAA1755Q5JYT7 1200 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 HYIQ5T013 277 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 FAM47EQ6ZV65 393 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ZNF804AQ7Z570 1209 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 TAB3Q8N5C8 712 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 THAP11Q96EK4 314 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 CEP95Q96GE4 821 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ACSBG1Q96GR2 724 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 AIFM3Q96NN9 605 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 EPB41L4AQ9HCS5 686 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 GPHNQ9NQX3 736 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 LEMD3Q9Y2U8 911 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 MEGF6O75095 1541 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 GOLGA8RI6L899 631 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 SPAG7O75391 227 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ECEL1O95672 775 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PMS2P54278 862 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 RASSF7Q02833 373 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 CENPCQ03188 943 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 IRGCQ6NXR0 463 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 RGS9BPQ6ZS82 235 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 MCUQ8NE86 351 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 GABPB2Q8TAK5 448 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 PUS3Q9BZE2 481 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 BLZF1Q9H2G9 400 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 CDV3Q9UKY7 258 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 NOVA2Q9UNW9 492 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 DNM3Q9UQ16 869 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ZC3H4Q9UPT8 1303 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 FOXN1O15353 648 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 SPAG6O75602 509 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 HSD17B3P37058 310 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 STAT2P52630 851 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ADAM9Q13443 819 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 LBRQ14739 615 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 CENPUQ71F23 418 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 BRD8Q9H0E9 1235 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 EBF2Q9HAK2 575 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PHF2O75151 1096 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 EYA4O95677 639 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 BFSP1Q12934 665 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 KPNB1Q14974 876 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 BMT2Q1RMZ1 405 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ASTE1Q2TB18 679 aaPredicted RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 KLHDC7AQ5VTJ3 777 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 KRT74Q7RTS7 529 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 IRF2BP1Q8IU81 584 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 KIRREL3Q8IZU9 778 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 SAMD3Q8N6K7 520 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 GDAP1Q8TB36 358 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 SLCO2A1Q92959 643 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 TRIM63Q969Q1 353 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 TRPV6Q9H1D0 765 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ARHGAP20Q9P2F6 1191 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 RIC1Q4ADV7 1423 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ARHGAP10A1A4S6 786 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 F8VZ95 297 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 PMM2O15305 246 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 PALMO75781 387 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 MOCS3O95396 460 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 HARSP12081 509 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 NCF2P19878 526 aaPredicted RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 GYS2P54840 703 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ADRM1Q16186 407 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 SGSM1Q2NKQ1 1148 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ADAT2Q7Z6V5 191 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 CCDC103Q8IW40 242 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 FBXL13Q8NEE6 735 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ZKSCAN3Q9BRR0 538 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 OLA1Q9NTK5 396 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 CCDC87Q9NVE4 849 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 WHRNQ9P202 907 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms