RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ZNF131P52739 623 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 SETQ01105 290 aaPredicted RBP17.93■□□□□ 0.46
VPS54-201ENST00000272322 PGM5Q15124 567 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 ANO5Q75V66 913 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 LMO3Q8TAP4 145 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 ACTRT1Q8TDG2 376 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 ATG4AQ8WYN0 398 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 ANKFY1Q9P2R3 1169 aa17.93■□□□□ 0.46
VPS54-201ENST00000272322 GRIN2DO15399 1336 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 PYGMP11217 842 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 TNNI1P19237 187 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 FGFR4P22455 802 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 C1orf220Q5T0J3 134 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 FOXR2Q6PJQ5 311 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 INTS8Q75QN2 995 aaKnown RBP17.92■□□□□ 0.46
VPS54-201ENST00000272322 SUCLA2Q9P2R7 463 aaPredicted RBP17.92■□□□□ 0.46
VPS54-201ENST00000272322 DAAM1Q9Y4D1 1078 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 LSP1P33241 339 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 PTGER2P43116 358 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 PRUNE1Q86TP1 453 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 OLIG1Q8TAK6 271 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 HES6Q96HZ4 224 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 ATP6V1G3Q96LB4 118 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 RIT2Q99578 217 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 SH3GL2Q99962 352 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 NUP85Q9BW27 656 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 MLXIPLQ9NP71 852 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 KLHL11Q9NVR0 708 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 GUCY2CP25092 1073 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 ZNF394Q53GI3 561 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 CIAPIN1Q6FI81 312 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 ZDHHC14Q8IZN3 488 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 MSL3Q8N5Y2 521 aaKnown RBP17.92■□□□□ 0.46
VPS54-201ENST00000272322 WHAMMQ8TF30 809 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 ZBTB45Q96K62 511 aaPredicted RBP17.92■□□□□ 0.46
VPS54-201ENST00000272322 SELENOSQ9BQE4 189 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 ADAM33Q9BZ11 813 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 TSPYL1Q9H0U9 437 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 SEL1LQ9UBV2 794 aa17.92■□□□□ 0.46
VPS54-201ENST00000272322 ANKRD62A6NC57 917 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 TMEM253P0C7T8 217 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 ZNF844Q08AG5 666 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 FSTL1Q12841 308 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 WRNIP1Q96S55 665 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 PDCD2LQ9BRP1 358 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 DEFB129Q9H1M3 183 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 TMEM59LQ9UK28 342 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 MYO1FO00160 1098 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 DDX3YO15523 660 aaKnown RBP17.91■□□□□ 0.46
VPS54-201ENST00000272322 ZNF862O60290 1169 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 DMP1Q13316 513 aaPredicted RBP17.91■□□□□ 0.46
VPS54-201ENST00000272322 SEPT14Q6ZU15 432 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 OTUD6AQ7L8S5 288 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 TAB3Q8N5C8 712 aaPredicted RBP17.91■□□□□ 0.46
VPS54-201ENST00000272322 PWWP2AQ96N64 755 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 FMO2Q99518 471 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 SIPA1L1O43166 1804 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 TULP2O00295 520 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 CLDN3O15551 220 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 FKBP1AP62942 108 aaKnown RBP17.91■□□□□ 0.46
VPS54-201ENST00000272322 TRAF1Q13077 416 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 IFT88Q13099 833 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 CDR2LQ86X02 465 aaPredicted RBP17.91■□□□□ 0.46
VPS54-201ENST00000272322 TMEM51Q9NW97 253 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 STXBP5LQ9Y2K9 1186 aa17.91■□□□□ 0.46
VPS54-201ENST00000272322 COL11A2P13942 1736 aaPredicted RBP17.9■□□□□ 0.46
VPS54-201ENST00000272322 SMTNP53814 917 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 TAX1BP1Q86VP1 789 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 MICALL2Q8IY33 904 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 RTKN2Q8IZC4 609 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 EPS8L1Q8TE68 723 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 MKNK1Q9BUB5 465 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 STK24Q9Y6E0 443 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 GOLGA6L10A0A0M3HER8 536 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 NR3C2P08235 984 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 CCDC172P0C7W6 258 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 IFNAR2P48551 515 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 MTM1Q13496 603 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 HP1BP3Q5SSJ5 553 aaPredicted RBP17.9■□□□□ 0.46
VPS54-201ENST00000272322 FBXW10Q5XX13 1052 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 MGARPQ8TDB4 240 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 TMEM206Q9H813 350 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 CNOT8Q9UFF9 292 aaKnown RBP17.9■□□□□ 0.46
VPS54-201ENST00000272322 TBX20Q9UMR3 447 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 TRPC6Q9Y210 931 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 ADGRA3Q8IWK6 1321 aa17.9■□□□□ 0.46
VPS54-201ENST00000272322 GTPBP10A4D1E9 387 aaKnown RBP17.89■□□□□ 0.46
VPS54-201ENST00000272322 H0YHG0 523 aa17.89■□□□□ 0.46
VPS54-201ENST00000272322 ZBED4O75132 1171 aa17.89■□□□□ 0.46
VPS54-201ENST00000272322 NPM3O75607 178 aaKnown RBP17.89■□□□□ 0.46
VPS54-201ENST00000272322 GPC5P78333 572 aa17.89■□□□□ 0.46
VPS54-201ENST00000272322 ARHGAP27Q6ZUM4 889 aa17.89■□□□□ 0.46
VPS54-201ENST00000272322 LRRIQ4A6NIV6 560 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 O00370 1275 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 CFHP08603 1231 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 PPP2R5AQ15172 486 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 SV2AQ7L0J3 742 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 CCDC50Q8IVM0 306 aa17.89■□□□□ 0.45
VPS54-201ENST00000272322 MRRFQ96E11 262 aaKnown RBP17.89■□□□□ 0.45
VPS54-201ENST00000272322 HACL1Q9UJ83 578 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms