RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PI4K2AQ9BTU6 479 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 INO80BQ9C086 356 aaPredicted RBP17.94■□□□□ 0.46
USP4-201ENST00000265560 TMEM117Q9H0C3 514 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 INTS2Q9H0H0 1204 aaKnown RBP17.94■□□□□ 0.46
USP4-201ENST00000265560 ADAMTS1Q9UHI8 967 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 MACROD2A1Z1Q3 448 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 GFPT2O94808 682 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 RTP1P59025 263 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 HTRA3P83110 453 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 BRDTQ58F21 947 aaPredicted RBP17.94■□□□□ 0.46
USP4-201ENST00000265560 HAUS4Q9H6D7 363 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 PDE11AQ9HCR9 933 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 SETD4Q9NVD3 440 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 LRRIQ3A6PVS8 624 aaPredicted RBP17.93■□□□□ 0.46
USP4-201ENST00000265560 CCP110O43303 1012 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 URI1O94763 535 aaPredicted RBP17.93■□□□□ 0.46
USP4-201ENST00000265560 CLSTN1O94985 981 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 TMEM130Q8N3G9 435 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 LRRN4CLQ8ND94 238 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 DNAJC12Q9UKB3 198 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 TMEM88BA6NKF7 163 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 ADCY3O60266 1144 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 HBP1O60381 514 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 MMP3P08254 477 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 IQCF3P0C7M6 154 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 TNFSF9P41273 254 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 CCDC122Q5T0U0 273 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 ZNF467Q7Z7K2 595 aaPredicted RBP17.93■□□□□ 0.46
USP4-201ENST00000265560 PARD3BQ8TEW8 1205 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 SEMA4DQ92854 862 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 ACP6Q9NPH0 428 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 AGO2Q9UKV8 859 aaKnown RBP17.93■□□□□ 0.46
USP4-201ENST00000265560 GABRQQ9UN88 632 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 AKT3Q9Y243 479 aa17.93■□□□□ 0.46
USP4-201ENST00000265560 CYLC1P35663 651 aaPredicted RBP17.92■□□□□ 0.46
USP4-201ENST00000265560 KLHL30Q0D2K2 578 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 TMEM132AQ24JP5 1023 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 ARHGEF19Q8IW93 802 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 GPD1LQ8N335 351 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 SLC17A8Q8NDX2 589 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 TRIP12Q14669 1992 aaPredicted RBP17.92■□□□□ 0.46
USP4-201ENST00000265560 USP8P40818 1118 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 PTK2Q05397 1052 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 PPP2R3AQ06190 1150 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 PPP2R5AQ15172 486 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 MSTO1Q9BUK6 570 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 UBE2TQ9NPD8 197 aaPredicted RBP17.92■□□□□ 0.46
USP4-201ENST00000265560 GJD2Q9UKL4 321 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 PPFIA4O75335 1185 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 MXI1P50539 228 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 ASIC2Q16515 512 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 IER5Q5VY09 327 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 C12orf56Q8IXR9 622 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 TAS1R2Q8TE23 839 aa17.92■□□□□ 0.46
USP4-201ENST00000265560 FAM49AQ9H0Q0 323 aaPredicted RBP17.92■□□□□ 0.46
USP4-201ENST00000265560 A0A087X0T9 212 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 RBM47A0AV96 593 aaKnown RBP17.91■□□□□ 0.46
USP4-201ENST00000265560 ENC1O14682 589 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 IPO7O95373 1038 aaKnown RBP17.91■□□□□ 0.46
USP4-201ENST00000265560 C22orf31O95567 290 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 FAM228BP0C875 321 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 FGFR4P22455 802 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 DRAP1Q14919 205 aaPredicted RBP17.91■□□□□ 0.46
USP4-201ENST00000265560 SLC9C1Q4G0N8 1177 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 SLC35F6Q8N357 371 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 CEP120Q8N960 986 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 CCDC102AQ96A19 550 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 PTPRJQ12913 1337 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 A0A087WZ62 844 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 CALCAP01258 141 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 TNNI1P19237 187 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 HNRNPH3P31942 346 aaKnown RBP17.91■□□□□ 0.46
USP4-201ENST00000265560 PSMC4P43686 418 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 CYP24A1Q07973 514 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 TRIM32Q13049 653 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 SPA17Q15506 151 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 IRF2BP2Q7Z5L9 587 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 SMC1BQ8NDV3 1235 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 LMO3Q8TAP4 145 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 FDXACB1Q9BRP7 624 aaPredicted RBP17.91■□□□□ 0.46
USP4-201ENST00000265560 IFIH1Q9BYX4 1025 aaKnown RBP17.91■□□□□ 0.46
USP4-201ENST00000265560 SLC5A4Q9NY91 659 aa17.91■□□□□ 0.46
USP4-201ENST00000265560 ZNF865P0CJ78 1059 aaPredicted RBP17.9■□□□□ 0.46
USP4-201ENST00000265560 CRELD2Q6UXH1 353 aaPredicted RBP17.9■□□□□ 0.46
USP4-201ENST00000265560 TLK2Q86UE8 772 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 ZNF516Q92618 1163 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 JAKMIP2Q96AA8 810 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 SCLT1Q96NL6 688 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 PACSIN1Q9BY11 444 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 PLCB1Q9NQ66 1216 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 IGKV6-21A0A0C4DH24 114 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 MSCO60682 206 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 CASQ1P31415 396 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 PPFIA1Q13136 1202 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 ZNF571Q7Z3V5 609 aaPredicted RBP17.9■□□□□ 0.46
USP4-201ENST00000265560 THNSL1Q8IYQ7 743 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 PPM1KQ8N3J5 372 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 PCDHA13Q9Y5I0 950 aa17.9■□□□□ 0.46
USP4-201ENST00000265560 ZNF233A6NK53 670 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 TMCO5BA8MYB1 307 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms